Detailed information NTG1131179

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: H0513_RS09560
• Genome accession: NZ_LR822023
• Coordinates: 1832890..1833327 (-)
• Length: 145 a.a.
• NCBI ID: WP_179972343.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_368
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1827890..1838327

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0513_RS09535 (STHERMO_2163)	-	1828688..1829350 (-)	663	WP_179972338.1	CPBP family intramembrane glutamic endopeptidase	-
H0513_RS11610 (STHERMO_2165)	-	1829447..1829888 (-)	442	Protein_1812	CAAX protease	-
H0513_RS09540 (STHERMO_2166)	-	1829900..1830097 (-)	198	WP_179972339.1	helix-turn-helix transcriptional regulator	-
H0513_RS09545 (STHERMO_2167)	-	1830345..1831538 (-)	1194	WP_179972340.1	acetate kinase	-
H0513_RS09550 (STHERMO_2168)	comYH	1831594..1832550 (-)	957	WP_179972341.1	class I SAM-dependent methyltransferase	Machinery gene
H0513_RS09555 (STHERMO_2169)	comGG	1832601..1832912 (-)	312	WP_179972342.1	competence type IV pilus minor pilin ComGG	-
H0513_RS09560 (STHERMO_2170)	comYF	1832890..1833327 (-)	438	WP_179972343.1	competence type IV pilus minor pilin ComGF	Machinery gene
H0513_RS09565 (STHERMO_2171)	comGE	1833311..1833604 (-)	294	WP_179972344.1	competence type IV pilus minor pilin ComGE	-
H0513_RS09570 (STHERMO_2172)	comGD	1833576..1834004 (-)	429	WP_269473123.1	competence type IV pilus minor pilin ComGD	-
H0513_RS09575 (STHERMO_2173)	comYC	1833964..1834290 (-)	327	WP_179972346.1	competence type IV pilus major pilin ComGC	Machinery gene
H0513_RS09580 (STHERMO_2174)	comYB	1834287..1835387 (-)	1101	WP_179973038.1	competence type IV pilus assembly protein ComGB	Machinery gene
H0513_RS09585 (STHERMO_2175)	comGA/cglA/cilD	1835269..1836210 (-)	942	WP_179972347.1	competence type IV pilus ATPase ComGA	Machinery gene
H0513_RS09590 (STHERMO_2176)	-	1836291..1836653 (-)	363	WP_179972348.1	DUF1033 family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16330.76 Da
• Isoelectric Point: 8.4525

>NTDB_id=1131179 H0513_RS09560 WP_179972343.1 1832890..1833327(-) (comYF) [Streptococcus thermophilus isolate STH_CIRM_368]
MYLSSNLRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVRQQENQDWLLFVQQMEAELEGCQLVKVEGNKLYVKQD
NQDLAFGLSSASDFRKTNADGRGYQPMLFDVKSSKVSQKNQIVTIQVTLKNGLQRNFIYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=1131179 H0513_RS09560 WP_179972343.1 1832890..1833327(-) (comYF) [Streptococcus thermophilus isolate STH_CIRM_368]
ATGTATCTAAGCAGTAATCTGCGTGCCTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTGGTCATTGCTGGCTCAGTTCA
AGTTTATCAAGGGTTAACCACTGTACTTGTGAGTAATGTTAAGCAGGTAAGACAACAAGAAAACCAAGACTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAATTAGAAGGATGTCAGTTGGTCAAGGTAGAGGGGAATAAACTCTATGTCAAGCAGGAT
AATCAAGACTTGGCTTTTGGTCTTTCAAGTGCCTCTGATTTTCGAAAAACAAATGCTGACGGTCGAGGCTATCAACCAAT
GCTTTTCGATGTCAAATCTAGTAAGGTAAGTCAAAAGAACCAGATAGTTACCATCCAAGTGACTCTTAAAAATGGACTAC
AAAGGAATTTTATTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	57.447	97.241	0.559
comYF	Streptococcus mutans UA159	56.738	97.241	0.552
comGF/cglF	Streptococcus pneumoniae D39	50	96.552	0.483
comGF/cglF	Streptococcus pneumoniae Rx1	50	96.552	0.483
comGF/cglF	Streptococcus pneumoniae R6	50	96.552	0.483
comGF/cglF	Streptococcus pneumoniae TIGR4	50	96.552	0.483
comGF/cglF	Streptococcus mitis NCTC 12261	48.227	97.241	0.469
comGF/cglF	Streptococcus mitis SK321	47.518	97.241	0.462
comGF	Lactococcus lactis subsp. cremoris KW2	46.377	95.172	0.441