Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   H0511_RS09620 Genome accession   NZ_LR822017
Coordinates   1868861..1870096 (+) Length   411 a.a.
NCBI ID   WP_179974101.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_336     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1863861..1875096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0511_RS09590 (STHERMO_2169) - 1864327..1866933 (+) 2607 WP_179974100.1 YfhO family protein -
  H0511_RS09610 (STHERMO_2170) - 1867477..1868161 (-) 685 Protein_1861 YoaK family protein -
  H0511_RS09615 (STHERMO_2172) rlmH 1868177..1868656 (-) 480 WP_179974550.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  H0511_RS09620 (STHERMO_2173) htrA 1868861..1870096 (+) 1236 WP_179974101.1 S1C family serine protease Regulator
  H0511_RS09625 (STHERMO_2174) spo0J 1870162..1870929 (+) 768 WP_084826210.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 411 a.a.        Molecular weight: 43130.44 Da        Isoelectric Point: 4.7176

>NTDB_id=1130997 H0511_RS09620 WP_179974101.1 1868861..1870096(+) (htrA) [Streptococcus thermophilus isolate STH_CIRM_336]
MKKFNWKKIIEPIAMLVIGLLGGLLGAFILLTAAGVSFTNTTDTGVKTAKTVYTNITDTTKAVKKVQNAVVSVINYQEGS
SSDSLNDLYDHIFGGEDSSDSSQENSKDSDGLQVASEGSGVIYKKDGKEAYIVTNNHVVDGAKKLEIMLSDGSKITGELV
GKDTYSDLAVVKVSSDKITTVAEFADSNSLTVGETAIAIGSPLGTEYANSVTEGIVSSLSRTITMQNDNGETVSTNAVQT
DAAINPGNSGGPLVNIEGQVIGINSSKISSTSAVAGSPVEGIGFAIPSNDVVEIINQLEKDGKVTRPALGISIADLNSLS
SSAISKLNLPDEVKSGVVVGSVQKGMPADGKLQEYDVITEIDGKKISSKTDIQTNLYRHSIGDTIKVTFYRGKDKKTVDI
KLTKSTKDISD

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=1130997 H0511_RS09620 WP_179974101.1 1868861..1870096(+) (htrA) [Streptococcus thermophilus isolate STH_CIRM_336]
ATGAAAAAATTTAACTGGAAAAAAATAATAGAGCCAATTGCAATGCTAGTTATTGGCTTACTAGGTGGTTTACTTGGTGC
CTTTATCCTACTAACAGCAGCCGGGGTATCTTTTACCAATACAACAGATACAGGAGTAAAGACGGCTAAGACCGTCTACA
CCAATATAACAGATACAACTAAGGCTGTTAAGAAAGTACAAAATGCCGTTGTTTCTGTCATCAATTATCAAGAAGGTTCA
TCTTCAGATTCTCTGAATGACCTATATGACCATATCTTTGGCGGAGAGGACAGTTCTGATTCTAGCCAAGAAAATTCAAA
AGATTCAGATGGTCTGCAGGTCGCTAGTGAAGGTTCTGGAGTCATCTATAAAAAAGATGGCAAAGAAGCCTACATCGTAA
CCAATAACCACGTTGTCGATGGGGCTAAAAAACTTGAAATTATGCTTTCGGATGGTTCAAAAATTACTGGTGAACTTGTT
GGTAAAGACACTTACTCTGACCTAGCAGTTGTCAAAGTATCTTCAGATAAAATAACAACTGTTGCAGAATTTGCAGACTC
AAACTCCCTTACTGTGGGTGAAACAGCAATTGCTATCGGTAGCCCACTTGGTACCGAATACGCCAACTCAGTAACAGAAG
GAATTGTTTCTAGCCTTAGCCGTACTATAACAATGCAAAACGATAATGGTGAAACTGTATCAACAAACGCTGTCCAAACA
GATGCAGCCATTAACCCTGGTAACTCTGGTGGTCCCCTAGTCAATATTGAAGGACAAGTTATCGGTATTAACTCAAGTAA
AATTTCATCAACGTCTGCAGTCGCTGGTAGTCCCGTTGAGGGTATAGGGTTTGCCATTCCATCAAACGATGTTGTTGAAA
TCATCAATCAATTAGAAAAAGATGGTAAAGTTACACGACCAGCACTAGGGATCTCAATAGCAGATCTTAATAGCCTTTCT
AGTAGCGCAATTTCTAAATTAAATTTACCAGATGAAGTCAAATCCGGTGTTGTTGTCGGTAGTGTTCAGAAAGGTATGCC
AGCTGACGGTAAACTTCAAGAATATGATGTTATCACTGAGATTGATGGTAAGAAAATCAGCTCAAAAACCGATATTCAAA
CCAATCTTTACAGACATAGTATCGGAGATACTATCAAGGTAACCTTCTATCGTGGTAAAGATAAGAAAACAGTAGATATT
AAATTAACAAAATCTACAAAAGACATATCTGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

61.042

98.054

0.599

  htrA Streptococcus gordonii str. Challis substr. CH1

57.524

100

0.577

  htrA Streptococcus mitis NCTC 12261

54.768

99.513

0.545

  htrA Streptococcus pneumoniae TIGR4

54.523

99.513

0.543

  htrA Streptococcus pneumoniae D39

54.523

99.513

0.543

  htrA Streptococcus pneumoniae Rx1

54.523

99.513

0.543

  htrA Streptococcus pneumoniae R6

54.523

99.513

0.543


Multiple sequence alignment