Detailed information NTG1130934

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: H0506_RS08515
• Genome accession: NZ_LR822015
• Coordinates: 1646871..1647299 (-)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_65
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1641871..1652299

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0506_RS08475 (STHERMO_1891)	-	1642004..1642452 (-)	449	Protein_1612	CAAX protease	-
H0506_RS09815 (STHERMO_1892)	-	1642526..1642951 (-)	426	WP_041827107.1	CPBP family intramembrane glutamic endopeptidase	-
H0506_RS08485 (STHERMO_1894)	-	1643194..1643391 (-)	198	WP_011681682.1	helix-turn-helix transcriptional regulator	-
H0506_RS08490 (STHERMO_1895)	-	1643640..1644833 (-)	1194	WP_022096898.1	acetate kinase	-
H0506_RS08495 (STHERMO_1896)	comYH	1644889..1645845 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
H0506_RS08500 (STHERMO_1897)	comGG	1645890..1646207 (-)	318	WP_011226623.1	competence type IV pilus minor pilin ComGG	-
H0506_RS08505 (STHERMO_1898)	comYF	1646185..1646622 (-)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
H0506_RS08510 (STHERMO_1899)	comGE	1646606..1646899 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
H0506_RS08515 (STHERMO_1900)	comYD	1646871..1647299 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
H0506_RS08520 (STHERMO_1901)	comYC	1647259..1647585 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
H0506_RS08525 (STHERMO_1902)	comYB	1647582..1648682 (-)	1101	WP_148148900.1	competence type IV pilus assembly protein ComGB	Machinery gene
H0506_RS08530 (STHERMO_1903)	comGA/cglA/cilD	1648564..1649505 (-)	942	WP_011226629.1	competence type IV pilus ATPase ComGA	Machinery gene
H0506_RS08535 (STHERMO_1904)	-	1649586..1649948 (-)	363	WP_011226630.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=1130934 H0506_RS08515 WP_011226626.1 1646871..1647299(-) (comYD) [Streptococcus thermophilus isolate STH_CIRM_65]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=1130934 H0506_RS08515 WP_011226626.1 1646871..1647299(-) (comYD) [Streptococcus thermophilus isolate STH_CIRM_65]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTTAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38