Detailed information    

insolico Bioinformatically predicted

Overview


Name   comA/nlmT   Type   Regulator
Locus tag   H0508_RS07630 Genome accession   NZ_LR822014
Coordinates   1479769..1481922 (-) Length   717 a.a.
NCBI ID   WP_179971652.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_36     
Function   transport of ComC (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1425325..1511446 1479769..1481922 within 0


Gene organization within MGE regions


Location: 1425325..1511446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0508_RS07340 (STHERMO_1633) gatA 1426591..1428057 (-) 1467 WP_002946584.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  H0508_RS07345 (STHERMO_1634) gatC 1428057..1428359 (-) 303 WP_002884769.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  H0508_RS07350 (STHERMO_1635) - 1428499..1428753 (-) 255 WP_011226449.1 glycosyl transferase -
  H0508_RS07355 (STHERMO_1636) - 1428766..1428975 (-) 210 WP_011226450.1 glycosyltransferase -
  H0508_RS07360 (STHERMO_1638) - 1429291..1430737 (-) 1447 Protein_1408 6-phospho-beta-glucosidase -
  H0508_RS07365 (STHERMO_1639) msrA 1430890..1431399 (-) 510 WP_002951714.1 peptide-methionine (S)-S-oxide reductase MsrA -
  H0508_RS07370 (STHERMO_1640) - 1431411..1432259 (-) 849 WP_041828318.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  H0508_RS07375 (STHERMO_1641) - 1432382..1432933 (-) 552 WP_179971648.1 cysteine hydrolase family protein -
  H0508_RS07380 (STHERMO_1642) codY 1432996..1433781 (-) 786 WP_002951720.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  H0508_RS07385 (STHERMO_1643) - 1434041..1435255 (-) 1215 WP_011226456.1 pyridoxal phosphate-dependent aminotransferase -
  H0508_RS07390 (STHERMO_1644) - 1435610..1436062 (+) 453 WP_002946987.1 universal stress protein -
  H0508_RS07395 - 1436242..1436813 (+) 572 Protein_1415 IS30 family transposase -
  H0508_RS07400 (STHERMO_1647) - 1436885..1437058 (-) 174 WP_011681546.1 hypothetical protein -
  H0508_RS07405 (STHERMO_1648) - 1437119..1437493 (-) 375 WP_041828320.1 membrane protein -
  H0508_RS07410 (STHERMO_1649) pflA 1437705..1438505 (-) 801 WP_002946980.1 pyruvate formate-lyase-activating protein -
  H0508_RS07415 - 1438693..1438803 (-) 111 WP_232085774.1 LPXTG cell wall anchor domain-containing protein -
  H0508_RS07420 (STHERMO_1652) - 1439501..1440832 (-) 1332 WP_002951727.1 hemolysin family protein -
  H0508_RS07425 (STHERMO_1653) - 1440945..1441727 (+) 783 WP_011226459.1 ABC transporter ATP-binding protein -
  H0508_RS07430 (STHERMO_1655) - 1442346..1444412 (-) 2067 WP_011226460.1 cation:proton antiporter -
  H0508_RS07435 (STHERMO_1656) - 1444421..1444663 (-) 243 WP_011226461.1 hypothetical protein -
  H0508_RS07440 (STHERMO_1657) - 1444660..1445208 (-) 549 WP_011226462.1 tRNA (mnm(5)s(2)U34)-methyltransferase -
  H0508_RS07445 (STHERMO_1658) - 1445205..1446149 (-) 945 WP_011226463.1 TIGR01212 family radical SAM protein -
  H0508_RS07450 (STHERMO_1659) sepM 1446234..1447310 (-) 1077 WP_179971649.1 SepM family pheromone-processing serine protease Regulator
  H0508_RS07455 (STHERMO_1660) coaD 1447288..1447785 (-) 498 WP_011226465.1 pantetheine-phosphate adenylyltransferase -
  H0508_RS07460 (STHERMO_1661) rsmD 1447819..1448418 (-) 600 Protein_1428 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  H0508_RS07465 (STHERMO_1662) trxB 1448509..1449462 (-) 954 WP_255136104.1 thioredoxin-disulfide reductase -
  H0508_RS07470 (STHERMO_1663) - 1449495..1449719 (-) 225 WP_011226468.1 DUF4059 family protein -
  H0508_RS07475 (STHERMO_1664) - 1449934..1450677 (-) 744 WP_011226469.1 amino acid ABC transporter ATP-binding protein -
  H0508_RS07480 (STHERMO_1665) - 1450677..1451423 (-) 747 WP_095559509.1 amino acid ABC transporter permease -
  H0508_RS07485 (STHERMO_1666) - 1451817..1452647 (-) 831 WP_041828322.1 transporter substrate-binding domain-containing protein -
  H0508_RS07490 (STHERMO_1668) - 1453107..1453340 (-) 234 WP_002947030.1 hypothetical protein -
  H0508_RS07495 (STHERMO_1669) dinB 1453638..1454741 (-) 1104 WP_011226472.1 DNA polymerase IV -
  H0508_RS07500 (STHERMO_1670) pflB 1455020..1457329 (+) 2310 WP_179971650.1 formate C-acetyltransferase -
  H0508_RS07505 (STHERMO_1671) - 1457592..1458374 (+) 783 WP_011226474.1 carbonic anhydrase -
  H0508_RS07510 (STHERMO_1672) - 1458425..1458877 (+) 453 WP_041828324.1 GNAT family N-acetyltransferase -
  H0508_RS07515 (STHERMO_1673) - 1458896..1459102 (-) 207 WP_179971553.1 DNA-binding protein -
  H0508_RS07520 (STHERMO_1674) - 1459230..1459535 (-) 306 WP_011226476.1 restriction endonuclease subunit S -
  H0508_RS09955 mobV 1459560..1460064 (-) 505 Protein_1441 MobV family relaxase -
  H0508_RS07530 (STHERMO_1678) - 1460549..1461098 (-) 550 Protein_1442 tyrosine-type recombinase/integrase -
  H0508_RS07535 (STHERMO_1679) - 1461230..1461916 (-) 687 WP_011226480.1 hypothetical protein -
  H0508_RS07540 (STHERMO_1680) - 1461992..1462747 (-) 756 WP_011226481.1 ABC transporter permease -
  H0508_RS07545 (STHERMO_1681) - 1462744..1463394 (-) 651 WP_011226482.1 ATP-binding cassette domain-containing protein -
  H0508_RS07550 (STHERMO_1683) - 1463596..1464552 (-) 957 WP_002951776.1 serine hydrolase domain-containing protein -
  H0508_RS07555 (STHERMO_1684) - 1464552..1465307 (-) 756 WP_179971651.1 CppA family protein -
  H0508_RS07560 - 1465590..1465865 (+) 276 WP_232085772.1 CPBP family intramembrane glutamic endopeptidase -
  H0508_RS07565 (STHERMO_1685) gla 1466039..1466902 (-) 864 WP_002951781.1 aquaglyceroporin Gla -
  H0508_RS07570 (STHERMO_1686) - 1467023..1469290 (+) 2268 WP_011226486.1 Xaa-Pro dipeptidyl-peptidase -
  H0508_RS07575 (STHERMO_1687) - 1469370..1469750 (-) 381 WP_002951783.1 hypothetical protein -
  H0508_RS07580 - 1469875..1470138 (-) 264 WP_002945924.1 hypothetical protein -
  H0508_RS07585 (STHERMO_1690) - 1470460..1470756 (-) 297 WP_011226487.1 bacteriocin immunity protein -
  H0508_RS07590 (STHERMO_1691) - 1470921..1471850 (-) 930 WP_041828328.1 thioredoxin family protein -
  H0508_RS07595 - 1472044..1473614 (+) 1571 WP_087009847.1 IS3-like element ISSth1b family transposase -
  H0508_RS09960 - 1473760..1474001 (-) 242 Protein_1456 Blp family class II bacteriocin -
  H0508_RS09965 (STHERMO_1694) - 1474252..1474653 (-) 402 WP_011226490.1 hypothetical protein -
  H0508_RS07605 (STHERMO_1697) - 1475640..1475870 (-) 231 WP_011226494.1 bacteriocin class II family protein -
  H0508_RS07610 (STHERMO_1698) - 1476120..1476851 (+) 732 WP_011226495.1 LytR/AlgR family response regulator transcription factor -
  H0508_RS09700 - 1477388..1478191 (+) 804 WP_224103634.1 ATP-binding protein -
  H0508_RS07620 (STHERMO_1700) - 1478209..1478370 (-) 162 WP_011226496.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  H0508_RS07625 (STHERMO_1701) - 1478385..1479753 (-) 1369 Protein_1462 bacteriocin secretion accessory protein -
  H0508_RS07630 (STHERMO_1704) comA/nlmT 1479769..1481922 (-) 2154 WP_179971652.1 peptide cleavage/export ABC transporter Regulator
  H0508_RS07635 (STHERMO_1708) - 1482936..1484681 (-) 1746 WP_011226501.1 ABC transporter ATP-binding protein -
  H0508_RS07640 (STHERMO_1709) - 1484674..1486431 (-) 1758 WP_011226502.1 ABC transporter ATP-binding protein -
  H0508_RS09705 (STHERMO_1711) - 1486619..1486825 (-) 207 WP_002948879.1 hypothetical protein -
  H0508_RS07650 (STHERMO_1712) - 1487030..1487557 (-) 528 WP_011226503.1 VanZ family protein -
  H0508_RS07655 (STHERMO_1713) rlmN 1487559..1488728 (-) 1170 WP_011226504.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  H0508_RS07660 (STHERMO_1714) - 1488732..1489454 (-) 723 WP_011226505.1 YutD family protein -
  H0508_RS07665 (STHERMO_1715) - 1489509..1490864 (-) 1356 WP_179971653.1 bifunctional metallophosphatase/5'-nucleotidase -
  H0508_RS07670 (STHERMO_1716) - 1491143..1491382 (-) 240 WP_041828333.1 hypothetical protein -
  H0508_RS07675 (STHERMO_1717) - 1491713..1493056 (-) 1344 WP_002948888.1 DEAD/DEAH box helicase -
  H0508_RS07680 (STHERMO_1718) mraY 1493131..1494153 (-) 1023 WP_011226507.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  H0508_RS07685 (STHERMO_1719) pbp2X 1494155..1496422 (-) 2268 WP_011226508.1 penicillin-binding protein PBP2X -
  H0508_RS07690 (STHERMO_1720) ftsL 1496426..1496746 (-) 321 WP_011226509.1 cell division protein FtsL -
  H0508_RS07695 (STHERMO_1721) rsmH 1496749..1497699 (-) 951 WP_041828335.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  H0508_RS09710 (STHERMO_1722) - 1497867..1498862 (-) 996 WP_232085853.1 hypothetical protein -
  H0508_RS07710 - 1498945..1499193 (+) 249 WP_041828337.1 hypothetical protein -
  H0508_RS07715 (STHERMO_1726) - 1499499..1499855 (-) 357 WP_011226513.1 DUF805 domain-containing protein -
  H0508_RS07720 (STHERMO_1727) - 1500075..1500371 (-) 297 WP_231108735.1 hypothetical protein -
  H0508_RS07725 (STHERMO_1728) - 1500725..1501975 (-) 1251 WP_011226515.1 glutamate-5-semialdehyde dehydrogenase -
  H0508_RS07730 (STHERMO_1729) proB 1501977..1502780 (-) 804 WP_002948808.1 glutamate 5-kinase -
  H0508_RS07735 (STHERMO_1730) - 1502901..1504490 (-) 1590 WP_011226516.1 hypothetical protein -
  H0508_RS07740 (STHERMO_1731) - 1504493..1505225 (-) 733 Protein_1484 ABC transporter ATP-binding protein -
  H0508_RS07745 (STHERMO_1734) - 1505499..1506232 (+) 734 Protein_1485 DUF554 domain-containing protein -
  H0508_RS07750 (STHERMO_1736) addA 1506626..1510279 (-) 3654 WP_179971654.1 helicase-exonuclease AddAB subunit AddA -

Sequence


Protein


Download         Length: 717 a.a.        Molecular weight: 80597.51 Da        Isoelectric Point: 6.8330

>NTDB_id=1130868 H0508_RS07630 WP_179971652.1 1479769..1481922(-) (comA/nlmT) [Streptococcus thermophilus isolate STH_CIRM_36]
MFRFRRTFVPQIDMRNCGVAALALVAKYYGSDYSLAHLRELVKTNKEGTTALGLVEAAKKIGFETRAIKAEMSLFEMEDV
PYPFIAHVNKDGKLQHYYVIYKSTKDYLIIGDPDPSVKVTKMTKERFEKEWTGVTLFMGPEPSYKPHKDKKNGLWDFLPL
IFKQRSLIANIVFASLLVTLINILGSYYLQGILDEYVPNQMKSTLGIISIGLVVTYVLQQMMTFARDYLLTILSQRLTID
VILSYIRHIFELPMSFFATRRTGEVISRFSDANSIIDALASTILSLFLDFSIVIIVGGVLLIQNSNLFKLVLCSVPIYTL
IVFAFMKPFELMNHDVMQSNAMVNSAIIEDINGIETIKSLTSEEVCYQKIDGEFVDYLDNSFRLSKLSILQTSLKQGAQL
ILNVLILWTGAQLVMGNTISIGQLITFNMLLSYFTNPLENIINLQTKLQSAKVANTRLNEVYLIESEFGQSDDTYQEGIA
DGDITVTDLSYKYGFGRDTLTDVSLTIRQGEKISFVGVSGSGKTTLAKMLVNFYQPYKGHIDFNGQNISRIDKKTLRQHI
NYLPQQSYIFSGSVLENLTLGAARGITQADILKACEIAEIRQDIENMPMGFQTELSDGAGLSGGQKQRIALARALLTKSP
VLILDEATSGLDVLTEKQVIDNLLALKDKTIIFVAHRLSIAERTDRIVVIDQGRVVETGSHQDLMSYPGFYYQLFRK

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=1130868 H0508_RS07630 WP_179971652.1 1479769..1481922(-) (comA/nlmT) [Streptococcus thermophilus isolate STH_CIRM_36]
ATGTTTCGTTTTCGTAGGACTTTTGTCCCTCAAATAGACATGAGGAATTGTGGAGTTGCTGCCTTGGCATTAGTGGCCAA
GTACTATGGTTCAGATTATTCATTAGCACATCTGCGTGAGTTGGTGAAGACCAATAAAGAAGGGACAACTGCATTAGGTC
TTGTAGAGGCTGCTAAAAAAATTGGCTTTGAAACGAGAGCTATAAAGGCTGAAATGTCGCTCTTTGAGATGGAAGATGTT
CCTTATCCTTTTATTGCTCATGTTAATAAAGATGGGAAGCTTCAACATTATTATGTTATTTATAAAAGCACCAAGGATTA
TCTGATAATTGGAGACCCTGATCCAAGTGTAAAAGTAACTAAAATGACTAAAGAGCGTTTTGAGAAAGAGTGGACAGGTG
TTACTCTTTTTATGGGACCGGAACCCAGTTATAAACCACATAAGGATAAGAAAAATGGACTCTGGGACTTTCTCCCTTTG
ATCTTTAAACAAAGGTCCTTGATAGCTAATATTGTCTTTGCCAGTCTCTTGGTTACTTTAATAAATATTTTAGGTTCCTA
TTATTTACAAGGTATTCTAGACGAATATGTCCCTAATCAAATGAAGTCTACCTTAGGAATTATCTCAATTGGATTAGTTG
TGACCTATGTTTTACAACAAATGATGACTTTTGCAAGAGATTATCTCTTAACCATACTGAGTCAGCGATTGACCATTGAC
GTTATCTTGTCCTACATACGACATATCTTTGAACTCCCAATGTCTTTTTTTGCCACAAGACGTACAGGGGAGGTTATCTC
ACGTTTTAGTGATGCTAACTCTATTATCGATGCTCTGGCTTCGACGATATTATCACTTTTCCTTGATTTCTCTATTGTGA
TTATCGTAGGAGGCGTGTTATTGATACAAAATAGCAATCTCTTCAAGCTAGTTCTTTGTTCGGTTCCAATTTATACCCTT
ATCGTCTTTGCCTTTATGAAACCTTTTGAGCTAATGAATCATGACGTCATGCAGAGTAATGCTATGGTTAATTCAGCCAT
CATTGAGGACATTAATGGGATTGAAACCATAAAGTCACTAACCAGCGAAGAAGTATGCTATCAAAAGATTGATGGTGAGT
TTGTTGACTATCTAGACAATTCTTTTCGCCTTTCTAAGTTATCTATACTACAAACATCATTGAAACAAGGTGCTCAACTT
ATTTTAAATGTACTTATCCTCTGGACAGGTGCTCAGTTGGTGATGGGAAATACCATTTCGATAGGACAATTGATTACTTT
TAATATGTTGCTTTCTTACTTCACGAATCCTTTGGAAAATATCATTAACCTGCAAACCAAGTTACAGTCTGCTAAGGTAG
CTAATACTAGGCTCAATGAGGTCTATCTGATTGAATCAGAGTTTGGACAAAGTGATGATACCTATCAAGAAGGCATTGCG
GATGGAGATATCACTGTTACGGATTTATCTTATAAATATGGTTTTGGTCGTGATACTTTGACTGATGTCAGTTTGACGAT
TAGACAAGGAGAAAAAATCAGTTTTGTTGGTGTCAGTGGATCTGGTAAGACTACTCTAGCTAAAATGTTGGTCAATTTTT
ATCAACCATATAAGGGGCACATAGATTTTAATGGTCAAAATATTAGTCGCATAGACAAGAAAACTCTTCGTCAACATATT
AACTATCTCCCTCAGCAATCCTATATATTTAGTGGTAGTGTTTTAGAAAATCTTACTTTAGGTGCAGCACGGGGTATTAC
GCAAGCTGATATTTTGAAAGCTTGTGAAATAGCAGAAATTCGTCAAGATATTGAAAACATGCCTATGGGGTTTCAGACAG
AGCTGTCTGATGGAGCAGGTCTGTCTGGAGGGCAAAAGCAACGTATCGCTTTGGCGCGTGCACTACTAACGAAATCTCCT
GTACTAATCTTAGATGAAGCAACTAGCGGATTGGATGTTTTGACAGAAAAGCAGGTTATTGATAACCTCCTAGCACTAAA
AGATAAAACGATCATCTTTGTAGCACACAGGCTTAGTATCGCTGAGCGGACCGACCGTATCGTAGTCATTGATCAGGGAC
GCGTAGTGGAGACAGGTTCTCATCAAGACCTGATGTCTTATCCAGGTTTCTATTATCAATTATTTAGAAAGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

67.927

99.582

0.676

  comA Streptococcus mitis NCTC 12261

66.245

99.163

0.657

  comA Streptococcus pneumoniae Rx1

65.823

99.163

0.653

  comA Streptococcus pneumoniae D39

65.823

99.163

0.653

  comA Streptococcus pneumoniae R6

65.823

99.163

0.653

  comA Streptococcus mitis SK321

65.541

99.163

0.65

  comA Streptococcus pneumoniae TIGR4

65.401

99.163

0.649

  comA Streptococcus gordonii str. Challis substr. CH1

64.146

99.582

0.639


Multiple sequence alignment