Detailed information NTG1130755

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: H0505_RS08515
• Genome accession: NZ_LR822012
• Coordinates: 1651919..1652356 (-)
• Length: 145 a.a.
• NCBI ID: WP_082309153.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_30
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1646919..1657356

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0505_RS08480 (STHERMO_1881)	-	1646977..1647639 (-)	663	WP_011227583.1	CPBP family intramembrane glutamic endopeptidase	-
H0505_RS08485 (STHERMO_1882)	-	1647742..1648035 (-)	294	WP_232085688.1	hypothetical protein	-
H0505_RS09930 (STHERMO_1883)	-	1648260..1648685 (-)	426	WP_111679733.1	CPBP family intramembrane glutamic endopeptidase	-
H0505_RS08495 (STHERMO_1885)	-	1648928..1649125 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
H0505_RS08500 (STHERMO_1886)	-	1649374..1650567 (-)	1194	WP_084831204.1	acetate kinase	-
H0505_RS08505 (STHERMO_1887)	comYH	1650623..1651579 (-)	957	WP_084831205.1	class I SAM-dependent methyltransferase	Machinery gene
H0505_RS08510 (STHERMO_1888)	comGG	1651624..1651941 (-)	318	WP_082309152.1	competence type IV pilus minor pilin ComGG	-
H0505_RS08515 (STHERMO_1889)	comYF	1651919..1652356 (-)	438	WP_082309153.1	competence type IV pilus minor pilin ComGF	Machinery gene
H0505_RS08520 (STHERMO_1890)	comGE	1652340..1652633 (-)	294	WP_082309154.1	competence type IV pilus minor pilin ComGE	-
H0505_RS08525 (STHERMO_1891)	comGD	1652605..1653033 (-)	429	WP_253269448.1	competence type IV pilus minor pilin ComGD	-
H0505_RS08530 (STHERMO_1892)	comYC	1652993..1653319 (-)	327	WP_002946126.1	competence type IV pilus major pilin ComGC	Machinery gene
H0505_RS08535 (STHERMO_1893)	comYB	1653316..1654416 (-)	1101	WP_120764773.1	competence type IV pilus assembly protein ComGB	Machinery gene
H0505_RS08540 (STHERMO_1894)	comYA	1654298..1655239 (-)	942	WP_084829888.1	competence type IV pilus ATPase ComGA	Machinery gene
H0505_RS08545 (STHERMO_1895)	-	1655320..1655682 (-)	363	WP_011226630.1	DUF1033 family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16423.93 Da
• Isoelectric Point: 8.9531

>NTDB_id=1130755 H0505_RS08515 WP_082309153.1 1651919..1652356(-) (comYF) [Streptococcus thermophilus isolate STH_CIRM_30]
MYLSSKLRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVRQQENQDWLLFVQQMEAELEGCQLVKVEGNKLYVKQD
NQYLAFGLSSASDFRKTNADGRGYQPMLFDVKSSKVSQKNQIVTIQVTLKNELQRSFVYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=1130755 H0505_RS08515 WP_082309153.1 1651919..1652356(-) (comYF) [Streptococcus thermophilus isolate STH_CIRM_30]
ATGTATCTAAGCAGTAAGCTGCGTGCCTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTGGTCATTGCTGGCTCAGTTCA
AGTTTATCAAGGGTTAACCACTGTACTTGTTAGTAATGTTAAGCAGGTAAGACAACAAGAAAACCAAGATTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAATTAGAAGGATGTCAGTTGGTCAAGGTAGAGGGGAACAAACTCTATGTCAAGCAGGAT
AATCAATACTTGGCTTTTGGTCTTTCAAGTGCCTCTGATTTTCGAAAAACAAATGCTGATGGTCGAGGTTATCAACCAAT
GCTTTTCGATGTCAAATCTAGTAAGGTAAGTCAAAAGAACCAGATAGTTACCATCCAAGTGACTCTTAAAAATGAACTAC
AAAGGAGTTTTGTTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.156	97.241	0.566
comYF	Streptococcus mutans UA159	57.447	97.241	0.559
comGF/cglF	Streptococcus pneumoniae D39	48.571	96.552	0.469
comGF/cglF	Streptococcus pneumoniae Rx1	48.571	96.552	0.469
comGF/cglF	Streptococcus pneumoniae R6	48.571	96.552	0.469
comGF/cglF	Streptococcus pneumoniae TIGR4	48.571	96.552	0.469
comGF/cglF	Streptococcus mitis NCTC 12261	47.518	97.241	0.462
comGF/cglF	Streptococcus mitis SK321	46.099	97.241	0.448
comGF	Lactococcus lactis subsp. cremoris KW2	45.324	95.862	0.434