Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   H0505_RS08505 Genome accession   NZ_LR822012
Coordinates   1650623..1651579 (-) Length   318 a.a.
NCBI ID   WP_084831205.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_30     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1645623..1656579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0505_RS08475 (STHERMO_1880) proC 1646177..1646947 (+) 771 WP_011226616.1 pyrroline-5-carboxylate reductase -
  H0505_RS08480 (STHERMO_1881) - 1646977..1647639 (-) 663 WP_011227583.1 CPBP family intramembrane glutamic endopeptidase -
  H0505_RS08485 (STHERMO_1882) - 1647742..1648035 (-) 294 WP_232085688.1 hypothetical protein -
  H0505_RS09930 (STHERMO_1883) - 1648260..1648685 (-) 426 WP_111679733.1 CPBP family intramembrane glutamic endopeptidase -
  H0505_RS08495 (STHERMO_1885) - 1648928..1649125 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  H0505_RS08500 (STHERMO_1886) - 1649374..1650567 (-) 1194 WP_084831204.1 acetate kinase -
  H0505_RS08505 (STHERMO_1887) comYH 1650623..1651579 (-) 957 WP_084831205.1 class I SAM-dependent methyltransferase Machinery gene
  H0505_RS08510 (STHERMO_1888) comGG 1651624..1651941 (-) 318 WP_082309152.1 competence type IV pilus minor pilin ComGG -
  H0505_RS08515 (STHERMO_1889) comYF 1651919..1652356 (-) 438 WP_082309153.1 competence type IV pilus minor pilin ComGF Machinery gene
  H0505_RS08520 (STHERMO_1890) comGE 1652340..1652633 (-) 294 WP_082309154.1 competence type IV pilus minor pilin ComGE -
  H0505_RS08525 (STHERMO_1891) comGD 1652605..1653033 (-) 429 WP_253269448.1 competence type IV pilus minor pilin ComGD -
  H0505_RS08530 (STHERMO_1892) comYC 1652993..1653319 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  H0505_RS08535 (STHERMO_1893) comYB 1653316..1654416 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  H0505_RS08540 (STHERMO_1894) comYA 1654298..1655239 (-) 942 WP_084829888.1 competence type IV pilus ATPase ComGA Machinery gene
  H0505_RS08545 (STHERMO_1895) - 1655320..1655682 (-) 363 WP_011226630.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35871.03 Da        Isoelectric Point: 4.7123

>NTDB_id=1130754 H0505_RS08505 WP_084831205.1 1650623..1651579(-) (comYH) [Streptococcus thermophilus isolate STH_CIRM_30]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
VVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1130754 H0505_RS08505 WP_084831205.1 1650623..1651579(-) (comYH) [Streptococcus thermophilus isolate STH_CIRM_30]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GTGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGGTCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTTTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

69.524

99.057

0.689
  comYH Streptococcus mutans UA140

69.524

99.057

0.689

Multiple sequence alignment