Detailed information    

insolico Bioinformatically predicted

Overview


Name   mecA   Type   Regulator
Locus tag   H0504_RS08050 Genome accession   NZ_LR822011
Coordinates   1571202..1571951 (-) Length   249 a.a.
NCBI ID   WP_011225365.1    Uniprot ID   Q5M699
Organism   Streptococcus thermophilus isolate STH_CIRM_23     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 1566202..1576951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0504_RS08030 (STHERMO_1802) - 1566525..1567757 (-) 1233 WP_011225367.1 cysteine desulfurase -
  H0504_RS08035 (STHERMO_1803) sufD 1567811..1569073 (-) 1263 WP_002947640.1 Fe-S cluster assembly protein SufD -
  H0504_RS08040 (STHERMO_1804) sufC 1569110..1569880 (-) 771 WP_002947634.1 Fe-S cluster assembly ATPase SufC -
  H0504_RS08045 (STHERMO_1805) - 1570041..1571198 (-) 1158 WP_002947632.1 glycosyltransferase family 4 protein -
  H0504_RS08050 (STHERMO_1806) mecA 1571202..1571951 (-) 750 WP_011225365.1 adaptor protein MecA Regulator
  H0504_RS08055 - 1572235..1572432 (+) 198 WP_232085789.1 DUF3021 family protein -
  H0504_RS08060 (STHERMO_1807) - 1572578..1573432 (-) 855 WP_041828107.1 undecaprenyl-diphosphate phosphatase -
  H0504_RS08065 (STHERMO_1808) - 1573635..1575185 (+) 1551 WP_011225362.1 ABC transporter substrate-binding protein/permease -
  H0504_RS08070 (STHERMO_1809) - 1575185..1575925 (+) 741 WP_002949253.1 amino acid ABC transporter ATP-binding protein -
  H0504_RS10170 - 1576014..1576121 (-) 108 WP_011225361.1 LPXTG cell wall anchor domain-containing protein -
  H0504_RS08080 (STHERMO_1810) - 1576208..1576378 (-) 171 WP_011225360.1 hypothetical protein -

Sequence


Protein


Download         Length: 249 a.a.        Molecular weight: 29157.70 Da        Isoelectric Point: 4.0659

>NTDB_id=1130690 H0504_RS08050 WP_011225365.1 1571202..1571951(-) (mecA) [Streptococcus thermophilus isolate STH_CIRM_23]
MEMKQINETTLKIMITMEDLEEHGMELKDFLIPQEKTEEFFYTVMDELDLPDNFKNSGMLSFRVTPRKDRVDVFVTKSDL
KEALDFNDLSDMEDYSGLSPEEFLKALEDNFMDKGDIEAHHKLEEHDKTLKEVDETMTEPAKEVAEETIREDYTHYVLAF
SDFDQVVTFAQGLKNVSVEGSEFYKLGDVYYMTILLYLADEPDYYANNMYARFLEYANVADRTRPYLQEHATILMEEDAL
PVLQATKWS

Nucleotide


Download         Length: 750 bp        

>NTDB_id=1130690 H0504_RS08050 WP_011225365.1 1571202..1571951(-) (mecA) [Streptococcus thermophilus isolate STH_CIRM_23]
ATGGAAATGAAACAAATAAACGAGACAACTCTAAAAATCATGATTACCATGGAAGATCTTGAAGAACATGGTATGGAGCT
GAAAGATTTCTTGATTCCCCAGGAAAAAACAGAGGAATTTTTCTATACTGTCATGGATGAGTTGGACTTGCCTGATAATT
TTAAAAATAGTGGGATGTTGAGCTTCCGTGTCACGCCACGAAAGGATCGTGTGGATGTTTTTGTGACTAAATCAGATCTT
AAGGAAGCCCTTGATTTCAATGATTTGTCAGATATGGAAGACTATTCAGGACTTTCTCCAGAAGAATTCCTCAAAGCTCT
TGAAGATAACTTTATGGATAAGGGAGATATTGAAGCCCACCATAAGCTCGAAGAGCATGATAAGACCTTGAAAGAGGTTG
ATGAGACTATGACAGAGCCGGCTAAGGAAGTGGCTGAGGAAACTATTCGTGAAGATTATACTCACTATGTCTTGGCTTTC
TCTGACTTTGATCAAGTAGTGACCTTTGCGCAAGGTTTGAAGAATGTGTCAGTGGAGGGTTCTGAATTTTATAAACTTGG
TGATGTCTACTATATGACTATCCTTCTTTACTTGGCTGATGAGCCTGATTATTACGCGAACAATATGTATGCGCGTTTTC
TTGAATATGCGAATGTGGCAGACCGAACACGTCCCTATCTACAAGAGCATGCAACAATCTTGATGGAAGAGGACGCCTTA
CCGGTATTACAAGCAACGAAATGGAGCTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q5M699

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mecA Streptococcus thermophilus LMG 18311

100

100

1

  mecA Streptococcus thermophilus LMD-9

99.197

100

0.992

  mecA Streptococcus mutans UA159

57.377

97.992

0.562

  mecA Streptococcus pneumoniae Rx1

46.185

100

0.462

  mecA Streptococcus pneumoniae D39

46.185

100

0.462

  mecA Streptococcus pneumoniae R6

46.185

100

0.462

  mecA Streptococcus pneumoniae TIGR4

46.185

100

0.462


Multiple sequence alignment