Detailed information    

insolico Bioinformatically predicted

Overview


Name   comA/nlmT   Type   Regulator
Locus tag   H0503_RS07875 Genome accession   NZ_LR822009
Coordinates   1515278..1517431 (-) Length   717 a.a.
NCBI ID   WP_041827378.1    Uniprot ID   A0A811IIL9
Organism   Streptococcus thermophilus isolate STH_CIRM_19     
Function   transport of ComC (predicted from homology)   
Competence regulation

Related MGE


Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1467682..1540501 1515278..1517431 within 0


Gene organization within MGE regions


Location: 1467682..1540501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0503_RS07625 (STHERMO_1701) - 1468573..1469124 (-) 552 WP_002946999.1 cysteine hydrolase family protein -
  H0503_RS07630 (STHERMO_1702) codY 1469187..1469972 (-) 786 WP_002951720.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  H0503_RS07635 (STHERMO_1703) - 1470232..1471446 (-) 1215 WP_002951721.1 pyridoxal phosphate-dependent aminotransferase -
  H0503_RS07640 (STHERMO_1704) - 1471801..1472253 (+) 453 WP_002946987.1 universal stress protein -
  H0503_RS10025 - 1472433..1473004 (+) 572 Protein_1473 IS30 family transposase -
  H0503_RS07645 (STHERMO_1707) - 1473076..1473249 (-) 174 WP_011681546.1 hypothetical protein -
  H0503_RS07650 (STHERMO_1708) - 1473310..1473684 (-) 375 WP_011681547.1 membrane protein -
  H0503_RS07655 (STHERMO_1710) pflA 1473896..1474696 (-) 801 WP_002946980.1 pyruvate formate-lyase-activating protein -
  H0503_RS07660 - 1474884..1474994 (-) 111 WP_014621906.1 LPXTG cell wall anchor domain-containing protein -
  H0503_RS07665 (STHERMO_1712) - 1475692..1477023 (-) 1332 WP_002951727.1 hemolysin family protein -
  H0503_RS07670 (STHERMO_1713) - 1477134..1477916 (+) 783 WP_011226459.1 ABC transporter ATP-binding protein -
  H0503_RS07675 (STHERMO_1715) - 1478538..1480604 (-) 2067 WP_179971428.1 cation:proton antiporter -
  H0503_RS07680 (STHERMO_1716) - 1480613..1480855 (-) 243 WP_011226461.1 hypothetical protein -
  H0503_RS07685 (STHERMO_1717) - 1480852..1481400 (-) 549 WP_011226462.1 tRNA (mnm(5)s(2)U34)-methyltransferase -
  H0503_RS07690 (STHERMO_1718) - 1481397..1482341 (-) 945 WP_011226463.1 TIGR01212 family radical SAM protein -
  H0503_RS07695 (STHERMO_1719) sepM 1482426..1483502 (-) 1077 WP_011681549.1 SepM family pheromone-processing serine protease Regulator
  H0503_RS07700 (STHERMO_1720) coaD 1483480..1483977 (-) 498 WP_011681550.1 pantetheine-phosphate adenylyltransferase -
  H0503_RS07705 (STHERMO_1721) rsmD 1484011..1484610 (-) 600 Protein_1486 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  H0503_RS07710 (STHERMO_1722) trxB 1484701..1485654 (-) 954 WP_255136104.1 thioredoxin-disulfide reductase -
  H0503_RS07715 (STHERMO_1723) - 1485687..1485911 (-) 225 WP_087010135.1 DUF4059 family protein -
  H0503_RS07720 (STHERMO_1724) - 1486126..1486869 (-) 744 WP_084829069.1 amino acid ABC transporter ATP-binding protein -
  H0503_RS07725 (STHERMO_1725) - 1486869..1487615 (-) 747 WP_179970821.1 amino acid ABC transporter permease -
  H0503_RS07730 (STHERMO_1726) - 1488011..1488841 (-) 831 WP_041828322.1 transporter substrate-binding domain-containing protein -
  H0503_RS07735 (STHERMO_1728) - 1489311..1489544 (-) 234 WP_084829828.1 hypothetical protein -
  H0503_RS07740 (STHERMO_1729) dinB 1489829..1490932 (-) 1104 WP_084829829.1 DNA polymerase IV -
  H0503_RS07745 (STHERMO_1730) pflB 1491210..1493519 (+) 2310 WP_011226473.1 formate C-acetyltransferase -
  H0503_RS07750 (STHERMO_1731) - 1493786..1494568 (+) 783 WP_011681555.1 carbonic anhydrase -
  H0503_RS07755 (STHERMO_1732) - 1494619..1495071 (+) 453 WP_014608655.1 GNAT family N-acetyltransferase -
  H0503_RS07760 (STHERMO_1733) - 1495422..1495706 (-) 285 WP_014608656.1 restriction endonuclease subunit S -
  H0503_RS10320 (STHERMO_1735) mobV 1495752..1496260 (-) 509 Protein_1498 MobV family relaxase -
  H0503_RS07770 (STHERMO_1737) - 1496705..1497460 (-) 756 WP_011681558.1 ABC transporter permease -
  H0503_RS07775 (STHERMO_1738) - 1497457..1498107 (-) 651 WP_011681559.1 ATP-binding cassette domain-containing protein -
  H0503_RS07780 (STHERMO_1740) - 1498310..1499266 (-) 957 WP_002951776.1 serine hydrolase domain-containing protein -
  H0503_RS07785 (STHERMO_1741) - 1499266..1500021 (-) 756 WP_011681560.1 CppA family protein -
  H0503_RS07790 (STHERMO_1742) - 1500303..1500665 (+) 363 WP_014608659.1 CPBP family intramembrane glutamic endopeptidase -
  H0503_RS07795 (STHERMO_1743) gla 1500752..1501615 (-) 864 WP_002951781.1 aquaglyceroporin Gla -
  H0503_RS07800 (STHERMO_1744) - 1501736..1504003 (+) 2268 WP_179970581.1 Xaa-Pro dipeptidyl-peptidase -
  H0503_RS07805 (STHERMO_1745) - 1504083..1504463 (-) 381 WP_002951783.1 hypothetical protein -
  H0503_RS07810 - 1504588..1504851 (-) 264 WP_002945924.1 hypothetical protein -
  H0503_RS07815 (STHERMO_1748) - 1505173..1505469 (-) 297 WP_004197070.1 bacteriocin immunity protein -
  H0503_RS07820 (STHERMO_1749) - 1505634..1505840 (-) 207 WP_011681562.1 hypothetical protein -
  H0503_RS07825 (STHERMO_1750) - 1505871..1506560 (-) 690 WP_011681563.1 thioredoxin family protein -
  H0503_RS07830 - 1506754..1508324 (+) 1571 WP_087009847.1 IS3-like element ISSth1b family transposase -
  H0503_RS07835 (STHERMO_1753) - 1508470..1508736 (-) 267 WP_179970580.1 bacteriocin -
  H0503_RS10325 (STHERMO_1754) - 1508987..1509388 (-) 402 WP_024703992.1 hypothetical protein -
  H0503_RS07840 (STHERMO_1759) - 1510393..1510623 (-) 231 WP_014608662.1 bacteriocin class II family protein -
  H0503_RS07845 (STHERMO_1760) - 1510979..1511179 (-) 201 WP_011681569.1 hypothetical protein -
  H0503_RS07850 (STHERMO_1761) - 1511198..1511374 (-) 177 WP_011681570.1 Blp family class II bacteriocin -
  H0503_RS07855 (STHERMO_1762) - 1511630..1512361 (+) 732 WP_002948869.1 LytR/AlgR family response regulator transcription factor -
  H0503_RS10035 - 1512898..1513701 (+) 804 WP_224102945.1 ATP-binding protein -
  H0503_RS07865 (STHERMO_1764) - 1513719..1513880 (-) 162 WP_011226496.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  H0503_RS07870 (STHERMO_1765) - 1513895..1515262 (-) 1368 WP_096811636.1 bacteriocin secretion accessory protein -
  H0503_RS07875 (STHERMO_1766) comA/nlmT 1515278..1517431 (-) 2154 WP_041827378.1 peptide cleavage/export ABC transporter Regulator
  H0503_RS07880 (STHERMO_1771) - 1518445..1520190 (-) 1746 WP_024703994.1 ABC transporter ATP-binding protein -
  H0503_RS07885 (STHERMO_1772) - 1520183..1521940 (-) 1758 WP_014608668.1 ABC transporter ATP-binding protein -
  H0503_RS10040 (STHERMO_1774) - 1522128..1522334 (-) 207 WP_002948879.1 hypothetical protein -
  H0503_RS07895 (STHERMO_1776) - 1522539..1523066 (-) 528 WP_011226503.1 VanZ family protein -
  H0503_RS07900 (STHERMO_1777) rlmN 1523068..1524237 (-) 1170 WP_011226504.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  H0503_RS07905 (STHERMO_1778) - 1524241..1524963 (-) 723 WP_011226505.1 YutD family protein -
  H0503_RS07910 (STHERMO_1779) - 1525018..1526373 (-) 1356 WP_179971429.1 bifunctional metallophosphatase/5'-nucleotidase -
  H0503_RS07915 (STHERMO_1782) - 1527221..1528564 (-) 1344 WP_014608670.1 DEAD/DEAH box helicase -
  H0503_RS07920 (STHERMO_1783) mraY 1528639..1529661 (-) 1023 WP_011227524.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  H0503_RS07925 (STHERMO_1784) pbp2X 1529663..1531930 (-) 2268 WP_179971430.1 penicillin-binding protein PBP2X -
  H0503_RS07930 (STHERMO_1785) ftsL 1531934..1532254 (-) 321 WP_014608671.1 cell division protein FtsL -
  H0503_RS07935 (STHERMO_1786) rsmH 1532257..1533207 (-) 951 WP_002888254.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  H0503_RS07940 (STHERMO_1787) - 1533374..1534108 (-) 735 WP_224103476.1 hypothetical protein -
  H0503_RS07950 (STHERMO_1790) - 1534434..1534697 (+) 264 WP_162877224.1 hypothetical protein -
  H0503_RS07955 (STHERMO_1792) - 1535003..1535359 (-) 357 WP_023909925.1 DUF805 domain-containing protein -
  H0503_RS07960 (STHERMO_1793) - 1535708..1535875 (-) 168 WP_153300736.1 hypothetical protein -
  H0503_RS07965 (STHERMO_1794) - 1536208..1537458 (-) 1251 WP_014608675.1 glutamate-5-semialdehyde dehydrogenase -
  H0503_RS07970 (STHERMO_1795) proB 1537460..1538263 (-) 804 WP_014608676.1 glutamate 5-kinase -
  H0503_RS07975 (STHERMO_1796) - 1538384..1539973 (-) 1590 WP_014608677.1 ABC transporter permease -

Sequence


Protein


Download         Length: 717 a.a.        Molecular weight: 80644.44 Da        Isoelectric Point: 6.8843

>NTDB_id=1130573 H0503_RS07875 WP_041827378.1 1515278..1517431(-) (comA/nlmT) [Streptococcus thermophilus isolate STH_CIRM_19]
MFRFRRTFVPQIDMRDCGVAALASVAKYYGSDYSLAHLRELAKTNKEGTTALGLVEAAKKIGFETRAIKAEMSLFEMEDV
PYPFIAHVNKDGKLQHYYVIYKSTKDYLIIGDPDPSVKVTKMTKERFEKEWTGVTLFMGPEPSYKPHKDKKNGLWDFLPL
IFKQRSLIANIVFASLLVTLINILGSYYLQGILDEYVPNQMKSTLGIISIGLVVTYVLQQMMTFARDYLLTILSQRFTID
VILSYIRHIFELPMSFFATRRTGEVISRFSDANSIIDALASTILSLFLDFSIVIIVGGVLLIQNSNLFKLVLCSVPIYTL
IVFAFMKPFERMNHDVMQSNAMVNSAIIEDINGIETIKSLTSEEVCYQKIDGEFIDYLDNSFRLSKLSILQTSLKQGAQL
ILNVLILWTGAQLVMGNTISIGQLITFNMLLSYFTNPLENIINLQTKLQSAKVANTRLNEVYLIESEFGQSDDTYQEGIA
DGDITVTDLSYKYGFGRDTLTDVSLTIRQGEKISFVGVSGSGKTTLAKMLVNFYQPYKGHIDFNGQNISRIDKKTLRQHI
NYLPQQSYIFSGSVLENLTLGAARGITQADILKACEIAEIRQDIENMPMGFQTELSDGAGLSGGQKQRIALARALLTKSP
VLILDEATSGLDVLTEKQVIDNLLALKDKTIIFVAHRLSIAERTDRIVVIDHGRVVETGSHQDLMSYPGFYYQLFRK

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=1130573 H0503_RS07875 WP_041827378.1 1515278..1517431(-) (comA/nlmT) [Streptococcus thermophilus isolate STH_CIRM_19]
ATGTTTCGTTTTCGTAGGACTTTTGTCCCTCAAATAGATATGAGGGATTGTGGAGTTGCTGCCTTGGCATCAGTGGCCAA
GTACTATGGTTCAGATTATTCATTAGCACATCTGCGTGAGTTGGCGAAGACCAATAAAGAAGGGACAACTGCCTTAGGTC
TTGTAGAGGCTGCTAAAAAAATTGGCTTTGAAACGAGAGCTATAAAGGCTGAAATGTCGCTCTTTGAGATGGAAGATGTT
CCTTATCCTTTTATTGCTCATGTTAATAAAGATGGGAAGCTTCAACATTATTATGTTATTTATAAAAGCACCAAGGATTA
TCTGATAATTGGAGACCCTGATCCAAGTGTAAAAGTAACTAAAATGACTAAAGAGCGTTTTGAGAAAGAGTGGACAGGTG
TTACTCTTTTTATGGGACCGGAACCCAGTTATAAACCACATAAGGATAAGAAAAATGGACTCTGGGACTTTCTCCCTTTG
ATCTTTAAACAAAGGTCCTTGATAGCTAATATTGTCTTTGCCAGTCTCTTGGTTACTTTAATAAATATTTTAGGTTCCTA
TTATTTACAAGGTATTCTAGACGAATATGTCCCTAATCAAATGAAGTCTACCTTAGGAATTATCTCAATTGGATTAGTTG
TGACCTATGTTTTACAACAAATGATGACTTTTGCAAGAGATTATCTCTTAACCATACTGAGTCAGCGATTTACCATTGAC
GTTATCTTGTCCTACATACGACATATCTTTGAACTCCCAATGTCTTTTTTTGCCACAAGACGTACAGGGGAGGTTATCTC
ACGTTTTAGTGATGCTAACTCTATTATCGATGCTCTGGCTTCGACGATATTATCACTTTTCCTTGATTTCTCTATTGTGA
TTATCGTAGGAGGCGTGTTATTGATACAAAATAGCAATCTCTTCAAGCTAGTTCTTTGTTCGGTTCCAATTTATACCCTT
ATCGTCTTTGCCTTTATGAAACCTTTTGAGCGAATGAATCATGACGTCATGCAGAGTAATGCTATGGTTAATTCAGCCAT
CATTGAGGACATTAATGGGATTGAAACCATAAAGTCACTAACCAGCGAAGAAGTATGCTATCAAAAGATTGATGGTGAGT
TTATTGACTATCTAGACAATTCTTTTCGCCTTTCTAAGTTATCTATACTACAAACATCATTGAAACAAGGTGCTCAACTT
ATTTTAAATGTACTTATCCTCTGGACAGGTGCTCAGTTGGTGATGGGAAATACCATTTCGATAGGACAATTGATTACTTT
TAATATGTTGCTTTCTTACTTCACGAATCCTTTGGAAAATATCATTAACCTGCAAACCAAGTTACAGTCTGCTAAGGTAG
CTAATACTAGGCTCAATGAGGTCTATCTGATTGAATCAGAGTTTGGACAAAGTGATGATACCTATCAAGAAGGCATTGCG
GATGGAGATATCACTGTTACGGATTTATCTTATAAATATGGTTTTGGTCGTGATACTTTGACTGATGTCAGTTTGACGAT
TAGACAAGGAGAAAAAATCAGTTTTGTTGGTGTCAGTGGATCTGGTAAGACTACTCTAGCTAAAATGTTGGTCAATTTTT
ATCAACCATATAAGGGGCACATAGATTTTAATGGTCAAAATATTAGTCGCATAGACAAGAAAACTCTTCGTCAACATATT
AACTATCTCCCTCAGCAATCCTATATATTTAGTGGTAGTGTTTTAGAAAATCTTACTTTAGGTGCAGCACGGGGTATTAC
GCAAGCTGATATTTTGAAAGCTTGTGAAATAGCAGAAATTCGTCAAGATATTGAAAACATGCCTATGGGGTTTCAGACAG
AGCTGTCTGATGGAGCAGGTCTGTCTGGAGGGCAAAAGCAACGTATCGCTTTGGCGCGTGCACTACTAACGAAATCTCCT
GTACTAATCTTAGATGAAGCAACTAGCGGATTGGATGTTTTGACAGAAAAGCAGGTTATTGATAACCTCCTAGCACTAAA
AGATAAAACGATCATCTTTGTAGCACACAGGCTTAGTATCGCTGAGCGGACCGACCGTATCGTAGTCATTGATCACGGAC
GCGTAGTGGAGACAGGTTCTCATCAAGACCTAATGTCTTATCCAGGTTTCTATTATCAATTATTTAGAAAGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A811IIL9

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

67.787

99.582

0.675

  comA Streptococcus mitis NCTC 12261

66.104

99.163

0.656

  comA Streptococcus pneumoniae Rx1

65.682

99.163

0.651

  comA Streptococcus pneumoniae D39

65.682

99.163

0.651

  comA Streptococcus pneumoniae R6

65.682

99.163

0.651

  comA Streptococcus mitis SK321

65.401

99.163

0.649

  comA Streptococcus pneumoniae TIGR4

65.26

99.163

0.647

  comA Streptococcus gordonii str. Challis substr. CH1

64.006

99.582

0.637


Multiple sequence alignment