Detailed information    

insolico Bioinformatically predicted

Overview


Name   mecA   Type   Regulator
Locus tag   H0501_RS01045 Genome accession   NZ_LR822008
Coordinates   180908..181657 (+) Length   249 a.a.
NCBI ID   WP_179970775.1    Uniprot ID   -
Organism   Streptococcus thermophilus isolate STH_CIRM_18     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context


Location: 175908..186657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H0501_RS01015 (STHERMO_0177) - 176483..176653 (+) 171 WP_011680664.1 hypothetical protein -
  H0501_RS01020 (STHERMO_0178) - 176740..176847 (+) 108 WP_011226802.1 LPXTG cell wall anchor domain-containing protein -
  H0501_RS01025 (STHERMO_0179) - 176934..177674 (-) 741 WP_002949253.1 amino acid ABC transporter ATP-binding protein -
  H0501_RS01030 (STHERMO_0180) - 177674..179224 (-) 1551 WP_014607891.1 ABC transporter substrate-binding protein/permease -
  H0501_RS01035 (STHERMO_0181) - 179427..180281 (+) 855 WP_041828107.1 undecaprenyl-diphosphate phosphatase -
  H0501_RS01040 - 180427..180642 (-) 216 WP_011226805.1 DUF3021 family protein -
  H0501_RS01045 (STHERMO_0182) mecA 180908..181657 (+) 750 WP_179970775.1 adaptor protein MecA Regulator
  H0501_RS01050 (STHERMO_0183) - 181661..182818 (+) 1158 WP_167401408.1 glycosyltransferase family 4 protein -
  H0501_RS01055 (STHERMO_0184) sufC 182978..183748 (+) 771 WP_002947634.1 Fe-S cluster assembly ATPase SufC -
  H0501_RS01060 (STHERMO_0185) sufD 183785..185047 (+) 1263 WP_002947640.1 Fe-S cluster assembly protein SufD -
  H0501_RS01065 (STHERMO_0186) - 185101..186333 (+) 1233 WP_011225367.1 cysteine desulfurase -

Sequence


Protein


Download         Length: 249 a.a.        Molecular weight: 29147.66 Da        Isoelectric Point: 4.0659

>NTDB_id=1130476 H0501_RS01045 WP_179970775.1 180908..181657(+) (mecA) [Streptococcus thermophilus isolate STH_CIRM_18]
MEMKQINETTLKIMITMEDLEEHGMELKDFLISQEKTEEFFYTVMDELDLPDNFKNSGMLSFRVTPRKDRVDVFVTKSDL
KEALDFNDLSDMEDYSGLSPEEFLKALEDNFMDKGDIEAHHKLEEHDKTLKEVDETMTEPAKEVAEETIREDYTHYVLAF
SDFDQVVTFAQGLKNVSVEGSEFYKLGDVYYMTILLYLADEPDYYANNMYARFLEYANVADRTRPYLQEHATILMEEDAL
PVLQATKWS

Nucleotide


Download         Length: 750 bp        

>NTDB_id=1130476 H0501_RS01045 WP_179970775.1 180908..181657(+) (mecA) [Streptococcus thermophilus isolate STH_CIRM_18]
ATGGAAATGAAACAAATAAACGAGACAACTCTAAAAATCATGATTACCATGGAAGATCTTGAAGAACATGGTATGGAGCT
GAAAGATTTCTTGATTTCCCAGGAAAAAACAGAGGAATTTTTCTATACTGTCATGGATGAGTTGGACTTGCCTGATAACT
TTAAAAATAGTGGGATGTTGAGCTTCCGTGTCACGCCACGAAAGGATCGTGTGGATGTTTTTGTGACTAAATCAGATCTT
AAGGAAGCCCTTGATTTCAATGATTTGTCAGATATGGAAGACTATTCAGGACTTTCTCCAGAAGAATTCCTCAAAGCTCT
TGAAGATAACTTTATGGATAAGGGAGATATTGAAGCCCACCATAAGCTCGAAGAGCATGATAAGACCTTGAAAGAGGTTG
ATGAGACTATGACAGAGCCGGCTAAGGAAGTGGCTGAGGAAACTATTCGTGAAGATTATACTCACTATGTCTTGGCTTTC
TCTGACTTTGATCAAGTAGTGACCTTTGCGCAAGGTTTGAAGAATGTGTCAGTGGAGGGTTCTGAATTTTATAAACTTGG
TGATGTCTACTATATGACTATCCTTCTTTACTTGGCTGATGAGCCTGATTATTACGCGAACAATATGTATGCGCGTTTTC
TTGAATATGCGAATGTGGCAGACCGAACACGTCCCTATCTACAAGAGCATGCAACAATCTTGATGGAAGAGGACGCCTTA
CCGGTATTACAAGCAACGAAATGGAGCTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mecA Streptococcus thermophilus LMG 18311

99.598

100

0.996

  mecA Streptococcus thermophilus LMD-9

98.795

100

0.988

  mecA Streptococcus mutans UA159

56.967

97.992

0.558

  mecA Streptococcus pneumoniae Rx1

45.783

100

0.458

  mecA Streptococcus pneumoniae D39

45.783

100

0.458

  mecA Streptococcus pneumoniae R6

45.783

100

0.458

  mecA Streptococcus pneumoniae TIGR4

45.783

100

0.458


Multiple sequence alignment