Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L1X59_RS00695 Genome accession   NZ_LR813086
Coordinates   151791..153329 (-) Length   512 a.a.
NCBI ID   WP_234687392.1    Uniprot ID   A0AA35D6G5
Organism   Comamonas aquatica isolate BB1454     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 146791..158329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1X59_RS00665 (TML_00130) - 146950..147585 (+) 636 WP_231499226.1 GIY-YIG nuclease family protein -
  L1X59_RS00670 (TML_00131) - 147657..148256 (-) 600 WP_234687387.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -
  L1X59_RS00675 (TML_00132) - 148253..148717 (-) 465 WP_234687388.1 DUF4878 domain-containing protein -
  L1X59_RS00680 (TML_00133) - 148873..149472 (-) 600 WP_234687389.1 glutathione S-transferase family protein -
  L1X59_RS00685 (TML_00134) - 149518..150735 (-) 1218 WP_234687390.1 YbfB/YjiJ family MFS transporter -
  L1X59_RS00690 (TML_00135) - 150812..151729 (+) 918 WP_234687391.1 LysR family transcriptional regulator -
  L1X59_RS00695 (TML_00136) comM 151791..153329 (-) 1539 WP_234687392.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L1X59_RS00700 (TML_00137) - 153536..153874 (+) 339 WP_042411906.1 P-II family nitrogen regulator -
  L1X59_RS00705 (TML_00138) - 153901..155265 (+) 1365 WP_081770788.1 ammonium transporter -
  L1X59_RS00710 (TML_00139) glcE 155533..156645 (+) 1113 WP_154164041.1 glycolate oxidase subunit GlcE -
  L1X59_RS00715 (TML_00140) glcF 156701..157942 (+) 1242 WP_234687393.1 glycolate oxidase subunit GlcF -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 54273.23 Da        Isoelectric Point: 8.2189

>NTDB_id=1130400 L1X59_RS00695 WP_234687392.1 151791..153329(-) (comM) [Comamonas aquatica isolate BB1454]
MSLACVQSRALLGLQAPAVTVEVHLANGLPSLALVGLADVEVKEARERVRCAIVNSGLEFPTNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDAARLHGWEFAGELSLSGELRPVRGALATSLALPWGQTPARLVLPLDSAAEAACAPQAEVYGA
AHLLDVVAQLLPPGATPHDRASTGWQRMLPPPRQAPRVLLDLAEVKGQVQAKRALEIAAAGSHAVLMVGPPGSGKSMLAH
RFAGLLPPMTEQEAVESAAIASLCGRFQATQWGQRRTAHPHHTASAVALVGGGSPPKPGEISLAHHGTLFLDEFPEFSRS
ALEALREPLETGCITIARATHSAEFPARFQLIAAMNPCPCGFWGSAQRSCRCTPDQVARYQGKLSGPLLDRIDLHVEVHS
LPAEQLLASTEGERSQAVQARVAQARARALQRQGCSNQLLQGDALEQHLQLEDSAAALVRKAADRLGWSARATHRALRVA
RTIADLAGSPHIASAHVAEAMQYRRTLVPARP

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=1130400 L1X59_RS00695 WP_234687392.1 151791..153329(-) (comM) [Comamonas aquatica isolate BB1454]
ATGAGCCTGGCTTGCGTCCAAAGTCGTGCCCTTTTGGGGCTGCAAGCGCCCGCCGTCACCGTGGAAGTGCATCTGGCCAA
CGGCCTGCCCAGCCTGGCCCTGGTGGGGCTGGCCGACGTGGAGGTCAAGGAAGCCCGCGAGCGCGTGCGCTGCGCCATCG
TCAACAGCGGCCTGGAATTTCCGACCAACAAGCGCATCACCGTGAACCTGGCGCCGGCCGACCTGCCCAAGGACTCCGGC
CGCTTCGACCTGCCCATCGCCCTGGGCATCCTGGCCGCCAGCGGGCAGATCGATGCGGCACGGCTCCACGGCTGGGAGTT
CGCGGGTGAGCTGTCGCTGTCCGGCGAGCTGCGCCCGGTGCGCGGAGCCTTGGCCACCAGCCTGGCCCTGCCCTGGGGCC
AGACCCCGGCACGCCTGGTGCTGCCGCTGGACAGCGCCGCCGAGGCGGCCTGCGCCCCGCAGGCCGAGGTCTATGGTGCC
GCCCACCTGCTGGATGTGGTGGCGCAACTGCTGCCCCCGGGTGCCACCCCGCATGACCGCGCCAGCACGGGCTGGCAGCG
CATGCTGCCGCCACCGCGCCAGGCGCCCCGGGTCCTGCTGGATCTGGCCGAGGTCAAGGGCCAGGTCCAGGCCAAGCGCG
CCCTGGAGATTGCCGCCGCCGGCAGCCATGCCGTGCTGATGGTCGGCCCGCCCGGGTCGGGCAAGTCCATGCTGGCCCAC
CGGTTTGCCGGCCTCCTGCCGCCCATGACCGAGCAGGAAGCCGTCGAAAGCGCGGCCATCGCCAGCCTGTGCGGGCGCTT
CCAGGCCACGCAGTGGGGCCAGCGCCGCACCGCCCACCCACACCACACGGCCAGCGCTGTGGCCCTGGTCGGCGGGGGCT
CACCGCCCAAGCCCGGTGAGATCTCCCTGGCCCACCATGGCACGCTGTTCCTCGATGAATTCCCCGAATTCAGCCGCAGC
GCGCTGGAGGCCCTGCGCGAGCCACTGGAGACCGGCTGCATCACCATCGCCCGCGCCACGCACAGCGCGGAGTTCCCGGC
GCGCTTCCAGCTGATTGCGGCCATGAACCCCTGCCCCTGCGGCTTCTGGGGCAGTGCCCAGCGCAGTTGCCGCTGCACGC
CCGACCAGGTGGCGCGCTACCAGGGCAAGCTCAGCGGCCCGCTGCTGGACCGCATCGACCTGCACGTCGAGGTGCACAGC
CTGCCGGCCGAGCAACTGCTGGCCAGCACCGAGGGCGAACGCAGCCAGGCCGTGCAGGCCCGCGTGGCCCAGGCGCGGGC
GCGGGCCCTGCAGCGCCAGGGCTGCAGCAACCAGCTGCTGCAGGGCGACGCGCTGGAGCAGCACCTGCAGCTGGAGGACA
GCGCCGCCGCCCTGGTGCGCAAGGCCGCCGACCGCCTGGGCTGGTCGGCCCGCGCCACCCACCGCGCGCTGCGCGTGGCG
CGCACCATCGCCGACCTGGCCGGCAGCCCCCACATCGCCAGCGCCCACGTGGCCGAGGCCATGCAGTACCGCCGCACCTT
GGTGCCCGCCCGCCCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(201-405)

Subunit ChlI of Mg-chelatase (ChlI)

(21-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.791

98.828

0.502
  comM Vibrio campbellii strain DS40M4

49.902

99.805

0.498
  comM Haemophilus influenzae Rd KW20

48.728

99.805

0.486
  comM Glaesserella parasuis strain SC1401

48.915

99.023

0.484
  comM Legionella pneumophila str. Paris

47.945

99.805

0.479
  comM Legionella pneumophila strain ERS1305867

47.945

99.805

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.074

99.805

0.42

Multiple sequence alignment