Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L1Z78_RS01465 Genome accession   NZ_LR813084
Coordinates   328294..329913 (-) Length   539 a.a.
NCBI ID   WP_234639813.1    Uniprot ID   -
Organism   Delftia tsuruhatensis isolate BB1455     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 323294..334913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1Z78_RS01445 (TML_00288) metC 323769..324971 (+) 1203 WP_234639809.1 cystathionine beta-lyase -
  L1Z78_RS01450 (TML_00289) - 324968..326041 (-) 1074 WP_234639810.1 NAD(P)H-dependent flavin oxidoreductase -
  L1Z78_RS01455 (TML_00290) - 326074..327276 (-) 1203 WP_326491963.1 YbfB/YjiJ family MFS transporter -
  L1Z78_RS01460 (TML_00291) - 327382..328299 (+) 918 WP_234639812.1 LysR family transcriptional regulator -
  L1Z78_RS01465 (TML_00292) comM 328294..329913 (-) 1620 WP_234639813.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L1Z78_RS01470 (TML_00293) - 330324..331967 (-) 1644 WP_234639814.1 AMP-binding protein -
  L1Z78_RS01475 (TML_00294) - 331985..333607 (-) 1623 WP_234639815.1 GMC family oxidoreductase -
  L1Z78_RS01480 (TML_00295) - 333670..334374 (-) 705 WP_234642068.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 539 a.a.        Molecular weight: 56820.63 Da        Isoelectric Point: 7.3993

>NTDB_id=1130377 L1Z78_RS01465 WP_234639813.1 328294..329913(-) (comM) [Delftia tsuruhatensis isolate BB1455]
MGLALVQSRALLGLAAPRVTVEVHLANGLPSFTLVGLADVEVKEARERVRSALLNSGLEFPSNKRIIVNLAPADLPKDSG
RFDLPIALGILAASGQIDGQALERYEFAGELSLSGALRPVRGALATALALHRQQDGACLVLPPGSAQEAAFVPSAQVFCA
HHLLDVVRRFIARAAHAPEPAAESENAAGQGTGEEPADEAAAGPPRPCTGPGWHAVQPQPATAVRSGLDLAEVRGQAQAR
RALEIAAAGGHGLLLVGPPGSGKSMLAQRFADLLPPMSDDEALEAAAIASLAGRFTPERWRQRPTASPHHTASAVALVGG
GSPPRPGEISQSHHGVLFLDEFPEFARSALEALREPLETGQITIARAAQRCEFPARFQLVAAMNPCPCGHWGSTVQRCRC
TPDKVARYQARISGPLLDRIDLHVEVGALPPQELLAARSGESSETVRERVVQARALAVQRQGGANHQLQGQALDEHLGLS
PEALAFAHKAAARLGWSARSTHRALKVARTIADLAGSEAIEVGHVAEAMQYRRVLRSPS

Nucleotide


Download         Length: 1620 bp        

>NTDB_id=1130377 L1Z78_RS01465 WP_234639813.1 328294..329913(-) (comM) [Delftia tsuruhatensis isolate BB1455]
ATGGGTCTGGCCCTGGTTCAAAGTCGTGCGCTGCTGGGGCTGGCCGCCCCGCGCGTCACCGTGGAAGTGCATCTGGCCAA
CGGCCTGCCGTCGTTCACGCTGGTGGGCCTGGCCGATGTCGAGGTCAAGGAGGCACGCGAGCGCGTGCGCTCGGCGCTGC
TGAATTCGGGGCTGGAATTCCCGAGCAACAAGCGCATCATCGTCAACCTCGCGCCGGCCGACCTGCCCAAGGACTCGGGG
CGCTTCGACCTTCCTATCGCGCTGGGCATCCTCGCGGCCAGCGGCCAGATCGACGGACAGGCCCTGGAGCGCTACGAATT
CGCGGGCGAGCTGTCGCTGTCGGGTGCGCTGCGGCCGGTGCGCGGCGCGCTGGCCACGGCCCTGGCCCTGCACCGCCAGC
AGGATGGCGCCTGCCTGGTGCTGCCGCCGGGCAGCGCGCAGGAGGCGGCCTTCGTGCCCTCGGCCCAGGTGTTCTGCGCC
CACCACCTGCTCGACGTGGTGCGCCGCTTCATCGCACGCGCGGCCCATGCCCCGGAGCCGGCGGCGGAGAGCGAAAACGC
CGCAGGCCAGGGCACCGGGGAGGAGCCGGCAGATGAGGCCGCCGCCGGGCCCCCCCGGCCTTGCACGGGACCGGGCTGGC
ACGCGGTGCAACCGCAGCCCGCCACAGCCGTGCGCAGCGGGCTCGACCTGGCCGAGGTGCGCGGCCAGGCCCAGGCACGG
CGCGCGCTGGAGATCGCGGCGGCCGGGGGCCACGGCCTGCTGCTGGTGGGACCGCCGGGCTCGGGCAAGTCCATGCTGGC
CCAGCGCTTCGCCGATCTGCTGCCCCCCATGAGCGACGACGAGGCGCTGGAGGCCGCCGCCATCGCCAGCCTGGCCGGCC
GCTTCACGCCCGAACGCTGGCGCCAGCGCCCCACGGCCAGCCCGCACCATACGGCCAGCGCCGTGGCCCTGGTGGGCGGA
GGCTCTCCGCCGCGCCCCGGCGAGATCTCGCAGTCCCACCATGGCGTGCTCTTCCTCGATGAATTCCCCGAGTTCGCGCG
CAGTGCGCTGGAGGCGCTGCGCGAGCCGCTGGAGACGGGCCAGATCACGATCGCCCGGGCAGCCCAGCGCTGCGAGTTTC
CCGCGCGCTTCCAGCTCGTGGCGGCCATGAACCCCTGTCCCTGCGGCCACTGGGGTTCGACCGTGCAGCGCTGCCGCTGC
ACGCCCGACAAGGTGGCGCGCTACCAGGCACGCATCAGCGGCCCGCTGCTGGACCGCATCGACCTGCATGTGGAGGTCGG
CGCCCTGCCCCCGCAGGAACTGCTGGCCGCGCGCAGCGGCGAAAGCAGCGAGACCGTGCGCGAGCGCGTGGTCCAGGCCC
GCGCGCTGGCCGTGCAGCGCCAGGGCGGCGCCAACCACCAGCTCCAGGGCCAGGCCCTGGACGAGCACCTGGGCCTGTCG
CCCGAAGCCCTGGCCTTCGCCCACAAGGCCGCTGCACGCCTGGGCTGGTCGGCACGCAGCACCCACCGCGCGCTCAAGGT
GGCGCGCACCATCGCCGACCTGGCCGGCAGCGAGGCCATCGAGGTCGGGCATGTGGCCGAGGCCATGCAGTACCGCAGGG
TGTTGCGGTCGCCGTCATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(440-532)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(229-432)

Subunit ChlI of Mg-chelatase (ChlI)

(21-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.794

100

0.488
  comM Vibrio campbellii strain DS40M4

47.786

100

0.481
  comM Glaesserella parasuis strain SC1401

47.681

100

0.477
  comM Haemophilus influenzae Rd KW20

46.84

99.814

0.468
  comM Legionella pneumophila str. Paris

45.387

100

0.456
  comM Legionella pneumophila strain ERS1305867

45.387

100

0.456
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.513

100

0.417

Multiple sequence alignment