Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NSCAC_RS06650 Genome accession   NZ_LR778175
Coordinates   1384595..1386112 (-) Length   505 a.a.
NCBI ID   WP_197744041.1    Uniprot ID   -
Organism   Candidatus Nitrosacidococcus tergens isolate NSCAC1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1379595..1391112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSCAC_RS06640 (NSCAC_1351) ilvD 1380705..1382555 (-) 1851 WP_197744039.1 dihydroxy-acid dehydratase -
  NSCAC_RS06645 (NSCAC_1352) rep 1382605..1384608 (-) 2004 WP_197744040.1 DNA helicase Rep -
  NSCAC_RS06650 (NSCAC_1353) comM 1384595..1386112 (-) 1518 WP_197744041.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NSCAC_RS06655 (NSCAC_1354) ubiK 1386155..1386439 (-) 285 WP_197744042.1 ubiquinone biosynthesis accessory factor UbiK -
  NSCAC_RS06660 (NSCAC_1355) - 1386751..1387827 (+) 1077 WP_197744043.1 porin -
  NSCAC_RS06665 (NSCAC_1356) - 1387913..1389115 (-) 1203 WP_197744044.1 hypothetical protein -
  NSCAC_RS06670 (NSCAC_1357) - 1389156..1390622 (-) 1467 WP_197744045.1 RimK family protein -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 55254.78 Da        Isoelectric Point: 9.2185

>NTDB_id=1130243 NSCAC_RS06650 WP_197744041.1 1384595..1386112(-) (comM) [Candidatus Nitrosacidococcus tergens isolate NSCAC1]
MPLAVTYSRAQSGIEAPLVTVEVHLSNGLPAFTIVGLPEATVKESRERVRGALLNSHFEFPARRITVNLAPADLPKEGGR
FDLAIALGILSASGQISPSNLTDYEFISELSLNGGLRSVRAVLPTALQTKRAKRILIIAKDNLLEIGLVSDIKVFSATNL
LEVCEYFQKQLPLSPLANLPKVSKNYYTDISDVRGQYQAKRSLEVAAAGGHNMLMIGPPGAGKTMLASCLPGILPPMTEQ
EALESATVQSISGQGFNPDHGWQQRPFRTPHHTASAVALVGGGGQPKPGEISLAHHGVLFLDELPEFERKVLEVLREPLE
SGKIIISRAARQIEFPAKFQLIAAMNPCPCGYLGDSRGKCRCTLEQIQRYGAKVSGPLLDRIDIHMEIPAVPLNLLHSEA
EKSAEQSIQVQARVKKARKVQYSRLNKLNSWLNNKEISQICMLSTQGYSLLEQASERLGFSARAYHRILKVARTIADLEA
SKTIEIPHLSEAIGYRRLDRIYGNA

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=1130243 NSCAC_RS06650 WP_197744041.1 1384595..1386112(-) (comM) [Candidatus Nitrosacidococcus tergens isolate NSCAC1]
ATGCCCTTAGCAGTTACCTATAGTCGTGCTCAATCTGGAATTGAAGCCCCCTTAGTTACGGTAGAAGTACATCTTTCCAA
TGGACTTCCTGCTTTTACCATTGTAGGATTACCTGAAGCTACGGTAAAAGAGAGTAGAGAGCGAGTTCGAGGAGCGTTAC
TCAATTCCCACTTTGAATTTCCAGCACGTCGTATCACCGTTAATTTAGCACCTGCTGACCTTCCTAAAGAAGGGGGACGA
TTTGATTTAGCCATAGCATTAGGTATTTTATCTGCTTCAGGGCAAATTTCTCCTTCCAATTTAACGGATTATGAGTTTAT
CAGTGAGCTTTCCTTAAATGGCGGGTTGAGAAGTGTTCGTGCAGTATTGCCTACTGCATTACAAACAAAGAGAGCTAAAC
GAATTCTAATTATAGCTAAGGACAATTTACTAGAAATTGGATTAGTTTCTGATATTAAAGTATTTTCAGCTACCAATTTA
TTGGAGGTATGTGAATATTTCCAGAAACAGCTACCCCTTTCTCCACTAGCAAATCTACCTAAAGTTAGTAAAAACTACTA
TACGGATATAAGTGATGTGCGTGGTCAATATCAGGCAAAGCGATCTTTAGAGGTTGCTGCTGCTGGGGGTCATAATATGT
TAATGATTGGCCCACCTGGGGCCGGAAAAACTATGTTAGCTAGCTGTCTACCAGGGATTTTGCCTCCAATGACAGAACAA
GAAGCTTTAGAAAGTGCGACTGTACAATCCATTAGTGGCCAAGGTTTTAATCCAGATCATGGCTGGCAACAGCGGCCTTT
TCGTACACCCCATCATACAGCCTCTGCAGTGGCATTAGTAGGTGGTGGTGGACAGCCTAAACCGGGGGAAATTTCTTTAG
CTCACCATGGAGTATTGTTCTTAGATGAATTGCCTGAATTTGAGCGGAAAGTTCTAGAAGTACTCAGAGAACCTTTAGAG
TCCGGAAAAATTATTATTTCTCGAGCGGCAAGGCAAATAGAATTTCCTGCAAAATTTCAGCTAATTGCAGCAATGAATCC
TTGTCCTTGCGGTTATTTAGGAGATTCTAGAGGGAAATGCCGATGTACTTTAGAGCAGATTCAACGGTATGGAGCTAAAG
TTTCAGGTCCCTTATTGGATCGGATTGATATTCACATGGAGATACCTGCAGTACCATTAAATTTATTACATTCTGAAGCA
GAAAAATCTGCAGAGCAAAGCATACAAGTTCAAGCAAGAGTAAAAAAAGCAAGAAAAGTGCAATATAGCCGATTAAATAA
GCTCAATAGTTGGCTTAATAACAAAGAAATTAGCCAGATATGTATGCTGAGCACTCAAGGCTATTCGTTATTGGAGCAAG
CCTCAGAGCGCTTAGGTTTTTCTGCACGAGCCTATCATCGTATTTTAAAAGTAGCTCGAACCATTGCAGATTTAGAAGCG
AGTAAAACAATTGAAATTCCTCACCTTTCAGAAGCTATTGGCTATCGGCGTTTAGATCGTATCTATGGAAACGCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.118

100

0.554
  comM Vibrio cholerae strain A1552

54.98

99.406

0.547
  comM Vibrio campbellii strain DS40M4

54.672

99.604

0.545
  comM Glaesserella parasuis strain SC1401

53.045

100

0.535
  comM Legionella pneumophila str. Paris

53.507

98.812

0.529
  comM Legionella pneumophila strain ERS1305867

53.507

98.812

0.529
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.471

100

0.469

Multiple sequence alignment