Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   AACL56_RS03845 Genome accession   NZ_LR743507
Coordinates   819501..821054 (-) Length   517 a.a.
NCBI ID   WP_339088510.1    Uniprot ID   A0A679IN33
Organism   Variovorax paradoxus isolate vvax     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 814501..826054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACL56_RS03835 (VVAX_00772) tagF 816671..817384 (+) 714 WP_339088508.1 type VI secretion system-associated protein TagF -
  AACL56_RS03840 (VVAX_00773) - 817425..819428 (+) 2004 WP_339088509.1 serine/threonine-protein kinase -
  AACL56_RS03845 (VVAX_00774) comM 819501..821054 (-) 1554 WP_339088510.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  AACL56_RS03850 (VVAX_00775) - 821274..822146 (+) 873 WP_339088511.1 TorF family putative porin -
  AACL56_RS03855 (VVAX_00776) glnK 822214..822552 (+) 339 WP_007833403.1 P-II family nitrogen regulator -
  AACL56_RS03860 (VVAX_00777) amt 822582..824006 (+) 1425 WP_339088512.1 ammonium transporter -
  AACL56_RS03865 (VVAX_00778) - 824195..825127 (+) 933 WP_339088513.1 SMP-30/gluconolactonase/LRE family protein -
  AACL56_RS03870 (VVAX_00779) - 825144..826028 (+) 885 WP_339088514.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 517 a.a.        Molecular weight: 54435.26 Da        Isoelectric Point: 8.0567

>NTDB_id=1129788 AACL56_RS03845 WP_339088510.1 819501..821054(-) (comM) [Variovorax paradoxus isolate vvax]
MSLSLVQSRALLGLEAASVTVEVHLANGLPSFTLVGLAETEVKEARERVRSAIQNAGLEFPNNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDNARLAGHEFAGELSLSGELRPVRGALAMALALHTRGVATRLVLPMDSAHEAALVPGGEVYGA
THLLDVVRQFLAGNGAQAPSSEPEANDGWSRIEAAPGAPAPRYADLCDVKGHAGVKRALEIAAAGGHSLLMVGEPGSGKS
MLAQRFAGLLPAMSIDEALESAAIASLGGRFAAERWMCRPTSAPHHTSSAVALVGGGSPPRPGEISRAHRGVLFLDEFPE
FARSALEALREPLETGTITISRAALSAEFPARFQLIAAMNPCPCGYLGSSLRPCRCTPTQVLRYQAKLSGPLLDRIDLHI
EVPAVSAQLLLDAPPGESTDSIRTRVVAARERAMRRQGHANQALQGGAIDRHAALDPAARQFMFNAANKLGWSARSTHRA
LKVARTIADLVGADAVEVPHVAEAVQYRRVLAGAQHK

Nucleotide


Download         Length: 1554 bp        

>NTDB_id=1129788 AACL56_RS03845 WP_339088510.1 819501..821054(-) (comM) [Variovorax paradoxus isolate vvax]
ATGAGTCTGTCTTTGGTGCAAAGCCGTGCCTTGCTGGGGCTGGAAGCTGCCAGCGTCACGGTCGAGGTGCATCTGGCGAA
CGGCTTGCCCAGCTTCACGCTGGTCGGGCTGGCGGAAACCGAGGTCAAGGAAGCGCGCGAGCGGGTGCGCTCGGCCATCC
AGAACGCGGGGCTGGAGTTTCCGAACAACAAACGGATCACCGTGAATCTGGCGCCTGCAGACCTTCCGAAGGACTCGGGC
CGATTCGACCTGCCGATCGCGCTGGGCATCCTCGCTGCCAGCGGGCAGATCGACAACGCCCGGCTGGCCGGCCACGAATT
CGCTGGTGAACTCTCGCTGTCGGGCGAGCTGCGTCCCGTCCGCGGTGCGCTGGCGATGGCGCTGGCGTTGCACACGCGCG
GCGTGGCCACAAGGCTGGTGCTGCCCATGGACAGCGCACACGAAGCGGCGCTGGTGCCAGGCGGCGAGGTGTACGGCGCC
ACGCACCTGCTGGACGTGGTGCGGCAGTTCCTGGCCGGCAACGGCGCACAGGCGCCATCGAGCGAACCCGAAGCGAACGA
CGGCTGGTCGCGCATCGAGGCCGCGCCCGGTGCACCCGCGCCGCGCTACGCCGACCTGTGCGACGTGAAGGGCCACGCGG
GCGTCAAGCGCGCACTCGAGATCGCCGCGGCCGGCGGCCACAGCCTGCTGATGGTCGGCGAGCCGGGTTCGGGCAAATCG
ATGCTCGCGCAGCGCTTCGCGGGGCTGCTGCCGGCCATGAGCATCGACGAGGCGCTGGAGAGCGCGGCCATCGCGAGCCT
TGGCGGGCGCTTCGCGGCCGAGCGATGGATGTGCCGGCCCACATCGGCGCCTCATCACACCTCGAGCGCGGTGGCGCTGG
TGGGCGGCGGCTCGCCGCCGCGGCCGGGCGAGATTTCGCGCGCGCATCGCGGCGTGCTCTTTCTCGACGAATTTCCGGAG
TTCGCGAGGTCGGCCCTCGAGGCGCTGCGCGAGCCCCTGGAAACCGGCACCATCACGATCTCCCGTGCGGCGCTCAGCGC
CGAGTTTCCCGCGCGCTTCCAGCTGATCGCGGCGATGAATCCCTGCCCCTGCGGCTACCTCGGCTCCTCGCTGAGGCCCT
GCCGCTGCACGCCGACCCAGGTGCTGCGCTACCAGGCCAAGCTCAGCGGCCCGCTGCTGGATCGCATCGACCTGCACATC
GAGGTGCCCGCGGTGTCGGCACAGCTGCTGCTCGATGCACCGCCCGGCGAATCGACCGACAGCATCCGCACGCGCGTGGT
CGCCGCCCGCGAACGCGCGATGCGCCGCCAGGGCCATGCCAACCAGGCGCTGCAGGGCGGCGCGATCGACCGGCATGCCG
CGCTCGATCCCGCGGCGCGGCAGTTCATGTTCAACGCGGCGAACAAGCTTGGCTGGTCGGCGCGCAGCACGCACCGCGCG
CTGAAGGTGGCACGCACGATCGCAGACCTGGTCGGCGCCGACGCGGTGGAGGTGCCGCACGTGGCCGAGGCGGTGCAGTA
CCGCCGGGTGCTGGCCGGCGCGCAGCACAAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(416-508)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(205-408)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A679IN33

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.569

98.646

0.509
  comM Haemophilus influenzae Rd KW20

50.294

98.839

0.497
  comM Glaesserella parasuis strain SC1401

50

99.033

0.495
  comM Vibrio campbellii strain DS40M4

49.513

99.226

0.491
  comM Legionella pneumophila str. Paris

48.638

99.42

0.484
  comM Legionella pneumophila strain ERS1305867

48.638

99.42

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.107

99.613

0.429

Multiple sequence alignment