Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   GPW69_RS07050 Genome accession   NZ_LR738724
Coordinates   1427979..1428920 (-) Length   313 a.a.
NCBI ID   WP_074391825.1    Uniprot ID   -
Organism   Streptococcus suis isolate 9401240     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1422979..1433920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW69_RS07025 prsA 1423083..1424084 (-) 1002 WP_044761681.1 peptidylprolyl isomerase PrsA -
  GPW69_RS07030 - 1424147..1424866 (-) 720 WP_043034995.1 O-methyltransferase -
  GPW69_RS07035 - 1424941..1425489 (-) 549 WP_029176930.1 DUF6630 family protein -
  GPW69_RS07040 - 1425500..1425946 (-) 447 WP_044761306.1 membrane protein -
  GPW69_RS07045 pepF 1425948..1427750 (-) 1803 WP_044668708.1 oligoendopeptidase F Regulator
  GPW69_RS07050 coiA 1427979..1428920 (-) 942 WP_074391825.1 competence protein CoiA Machinery gene
  GPW69_RS07055 metG 1428984..1430987 (-) 2004 WP_044671000.1 methionine--tRNA ligase -
  GPW69_RS07060 - 1431196..1431945 (-) 750 WP_074391824.1 hypothetical protein -
  GPW69_RS07065 - 1432027..1432638 (-) 612 WP_074391823.1 DUF3885 domain-containing protein -
  GPW69_RS07070 - 1432761..1433636 (+) 876 WP_074391822.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36289.88 Da        Isoelectric Point: 7.6861

>NTDB_id=1129601 GPW69_RS07050 WP_074391825.1 1427979..1428920(-) (coiA) [Streptococcus suis isolate 9401240]
MLVALDEDGQVFNVLENPAPQGSYSCPGCGGLVRYKSGKVLRSHFAHVTLRDCHYFSENESAQHLSLKSCLYSWLINAEQ
VELEKCLPSIGQVADLFVNDRLALEVQCSSLPISRLQVRTQAYHEAGLQVLWLLGKGLWLKERLSKLHKQFLSFSMNMGF
HLWELDDEKKELRLRYLIHEDLRGKVHCLTKVFPFGEGNLLEILRLPFAKQALSHLTCPLDRDLPRYIARQLYYRTPNWL
ALQAEAYGRGENLLTKTAEEWYPHIRLPRSAIGFAQIQKDLTLVYQDFDQHYDSIEDKQKQVLYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=1129601 GPW69_RS07050 WP_074391825.1 1427979..1428920(-) (coiA) [Streptococcus suis isolate 9401240]
ATGTTAGTTGCACTTGATGAAGATGGACAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGTAGCTATTCTTGTCC
AGGTTGTGGAGGGCTGGTCCGATACAAATCCGGAAAAGTTCTGCGTTCGCACTTTGCCCATGTAACCCTGCGGGACTGCC
ACTACTTTTCCGAGAATGAGTCGGCCCAGCACCTGTCCCTTAAGTCTTGTCTGTACAGTTGGTTAATCAATGCCGAACAA
GTTGAACTTGAAAAATGCCTGCCTAGTATAGGGCAGGTCGCTGATTTATTTGTCAATGATCGTTTAGCCTTGGAAGTACA
GTGTTCCAGTCTACCCATTTCTCGTTTGCAGGTGAGGACGCAAGCCTATCATGAAGCTGGTCTTCAGGTTCTCTGGCTGT
TGGGAAAAGGCCTATGGTTAAAAGAAAGATTAAGCAAATTACACAAGCAATTCCTCTCTTTTAGTATGAACATGGGTTTT
CACCTCTGGGAATTGGATGATGAGAAAAAAGAATTGCGTCTTCGTTACCTTATTCATGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGGTTTTTCCATTTGGCGAGGGAAATTTATTGGAAATATTGCGTCTACCATTTGCCAAGCAAGCTTTAT
CGCATCTTACTTGCCCGTTAGATAGGGATTTGCCTCGCTACATTGCTCGTCAGCTGTATTACAGAACTCCCAATTGGTTA
GCCCTACAGGCGGAAGCCTATGGTCGTGGTGAAAATCTACTAACCAAGACGGCAGAAGAATGGTATCCCCACATCCGTCT
ACCCCGCTCTGCCATTGGCTTTGCCCAAATACAAAAAGATTTAACCCTAGTTTATCAGGATTTTGACCAGCATTACGACA
GTATTGAAGACAAGCAGAAACAGGTTCTATATCCACCTATAATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(22-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

53.205

99.681

0.53
  coiA Streptococcus pneumoniae TIGR4

51.282

99.681

0.511
  coiA Streptococcus pneumoniae Rx1

51.282

99.681

0.511
  coiA Streptococcus pneumoniae D39

51.282

99.681

0.511
  coiA Streptococcus pneumoniae R6

51.282

99.681

0.511
  coiA Lactococcus lactis subsp. cremoris KW2

41.615

100

0.428

Multiple sequence alignment