Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GPW69_RS07045 Genome accession   NZ_LR738724
Coordinates   1425948..1427750 (-) Length   600 a.a.
NCBI ID   WP_044668708.1    Uniprot ID   -
Organism   Streptococcus suis isolate 9401240     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1420948..1432750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW69_RS07020 - 1422389..1422874 (-) 486 WP_074391826.1 LURP-one-related/scramblase family protein -
  GPW69_RS07025 prsA 1423083..1424084 (-) 1002 WP_044761681.1 peptidylprolyl isomerase PrsA -
  GPW69_RS07030 - 1424147..1424866 (-) 720 WP_043034995.1 O-methyltransferase -
  GPW69_RS07035 - 1424941..1425489 (-) 549 WP_029176930.1 DUF6630 family protein -
  GPW69_RS07040 - 1425500..1425946 (-) 447 WP_044761306.1 membrane protein -
  GPW69_RS07045 pepF 1425948..1427750 (-) 1803 WP_044668708.1 oligoendopeptidase F Regulator
  GPW69_RS07050 coiA 1427979..1428920 (-) 942 WP_074391825.1 competence protein CoiA Machinery gene
  GPW69_RS07055 metG 1428984..1430987 (-) 2004 WP_044671000.1 methionine--tRNA ligase -
  GPW69_RS07060 - 1431196..1431945 (-) 750 WP_074391824.1 hypothetical protein -
  GPW69_RS07065 - 1432027..1432638 (-) 612 WP_074391823.1 DUF3885 domain-containing protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69160.36 Da        Isoelectric Point: 4.5737

>NTDB_id=1129600 GPW69_RS07045 WP_044668708.1 1425948..1427750(-) (pepF) [Streptococcus suis isolate 9401240]
MSKQRYEIEEKYQWDLTTIFPTDEAWEAELADLQAETEKTKEFAGHLLDSAKSLLTISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYSVFSQAFAFYEPEFMAITEEQLEAFKAEEPALVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGHLVPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYSAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1129600 GPW69_RS07045 WP_044668708.1 1425948..1427750(-) (pepF) [Streptococcus suis isolate 9401240]
ATGTCTAAACAACGTTACGAAATTGAAGAAAAATACCAGTGGGACTTGACCACTATTTTCCCAACAGATGAAGCCTGGGA
AGCAGAACTTGCAGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCACTTGCTCGACTCAGCGAAGAGCC
TTTTGACAATCAGCGAAACGCAACTTGGTCTTATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAC
CAAGATACTCGTGAAGGCAAATACCAGGAATTTCAAGCTAAAGCCATGGGCTTGTATTCGGTCTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAGTTTATGGCCATTACTGAAGAGCAGTTGGAGGCCTTTAAGGCAGAGGAGCCAGCTCTTGTTCAGT
ACAGCCACCAATTTGAAAAACTTTTAGCGGCTAAGGACCATGTCCTGTCACAAGAGGTGGAAGAAGTATTGGCAGCGACC
AGCGAGATTTTCGAATCACCTGCTGAAACCTTCTCAGTCTTGGACAATGCCAGCCTGCGTTTCCCAGAAATCGCAGATGA
GGACGGTCACTTGGTGCCCCTTTCACACGGTAACTACATTCACTTTATGGAGTCTAAAAACCGTGACGTCCGCCAAGAAG
CATATGAGGCTATGTACGGTACCTACGAGCAGTTCCAGCATACCTATGCTAAGACTTTGCAGTCTAATGTCAAGGTCAAT
AACCTGAAAGCTCGTTTGCGGAAGTACGATTCAGCCCGTCACGCATCACTTGCAGCTAATTTCATTCCAGAATCCGTTTA
CGATACATTGGTAGCGGCAGTCAACAAGCACCTTCCGCTCTTGCACCGTTATATCAATTTGCGTAAGAAACTCTTGGGTA
TTGATGACTTGAAGATGTATGATATGTACACGCCATTGTCAGATTTCAGTACCAAGATTTCTTATGAAGATGCACTCAAG
AAATGCCAAGAAACCTTGGAAATTTTCGGTGAGGATTATTCGGCTATTGTAAAAGAAGCCTTCGAAAACCGCTGGATTGA
TGTCCACGTTAATGAAGGAAAACGCTCAGGAGCATACTCAGGAGGTGCTTACGACACCAACGCCTTCATGCTTCTCAACT
GGCAGGATAACTTGGATAACATGTACACTCTTATCCATGAAACAGGGCATTCTCTCCATTCTATGTTGACTCGTAAGACT
CAACCCTATGTCTATGGACATTATTCCCTATTCTTGGCTGAAATTGCTTCAACGACCAATGAAAATCTTTTGACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCTATTCTCAATCACTATCTAGATGGTTTCCGTGGTACAGTCT
TCCGCCAGACCCAATTTGCCGAGTTTGAACAGGCTATCTATAAGGCAGACCAGGAAGGTCAAGTCTTGACGGCTGATTTC
CTCAATGAATTGTACGGTCAGACAAACGAGAAATACTACGGACTTTCTGCAGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGCATTCCACACTTCTATTACAATTTCTATGTCTATCAATATGCGACAGGTTTTGCGGCAGCATCAGCTCTTGCAA
ACAAAATTGTCAATGGTAGTCCAGAAGACAAAGAAAACTATCTTAACTACTTGAAGGCTGGTAGCTCAGACTACTCACTC
AATGTCATTGCAAAAGCTGGTGTAGACATGACCAAGGAAGATTACCTCAACGATGCTTTCAAGGTATTTGAAGCTCGTTT
GGAAGAATTAGAAGCTCTCGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.833

100

0.698

Multiple sequence alignment