Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   PDMSB3_RS02070 Genome accession   NZ_LR699553
Coordinates   437079..437618 (+) Length   179 a.a.
NCBI ID   WP_007179393.1    Uniprot ID   A0A5Q4Z8Z3
Organism   Paraburkholderia dioscoreae strain Msb3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 432079..442618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDMSB3_RS02060 (PDMSB3_0435) uvrA 432551..435424 (-) 2874 WP_165184391.1 excinuclease ABC subunit UvrA -
  PDMSB3_RS02065 (PDMSB3_0436) - 435756..436943 (+) 1188 WP_041743926.1 MFS transporter -
  PDMSB3_RS02070 (PDMSB3_0437) ssb 437079..437618 (+) 540 WP_007179393.1 single-stranded DNA-binding protein Machinery gene
  PDMSB3_RS02075 (PDMSB3_0438) - 437754..439067 (-) 1314 WP_007179392.1 MFS transporter -
  PDMSB3_RS02080 (PDMSB3_0439) - 439200..439631 (-) 432 WP_007179391.1 VOC family protein -
  PDMSB3_RS02085 (PDMSB3_0440) - 439971..440711 (+) 741 WP_165184393.1 GntR family transcriptional regulator -
  PDMSB3_RS02090 (PDMSB3_0441) - 440788..441339 (-) 552 WP_007179389.1 heme-binding protein -
  PDMSB3_RS02095 (PDMSB3_0442) - 441445..442182 (-) 738 WP_165184395.1 MmgE/PrpD family protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 18430.21 Da        Isoelectric Point: 5.3552

>NTDB_id=1129337 PDMSB3_RS02070 WP_007179393.1 437079..437618(+) (ssb) [Paraburkholderia dioscoreae strain Msb3]
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGEMKEATEWHRVSFFGRLAEIVSEYLKKGSSVYLEG
RIRTRKWQAQDGTDRYSTEIVAEQMQMLGGRGGSMGGGGDEGGYSRGEPSERSGGGGGGRAASGGGSRGGSGGGAGGGAS
RPSAPAGGGFDEMDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=1129337 PDMSB3_RS02070 WP_007179393.1 437079..437618(+) (ssb) [Paraburkholderia dioscoreae strain Msb3]
ATGGCATCCGTGAACAAGGTCATTCTCGTCGGCAATCTCGGAGCCGATCCGGAAGTCCGTTATCTTCCGAGCGGCGACGC
AGTGGCGAACATCCGCCTTGCAACGACGGATCGGTACAAGGACAAGGCGTCCGGCGAAATGAAGGAAGCGACTGAATGGC
ACCGTGTGTCGTTCTTCGGTCGCCTCGCGGAAATCGTGTCCGAATATCTGAAGAAGGGCTCGTCGGTGTACCTGGAAGGG
CGCATCCGTACCCGCAAGTGGCAGGCGCAAGACGGCACCGACCGTTATTCGACCGAAATCGTCGCTGAGCAGATGCAAAT
GCTGGGTGGCCGCGGCGGCTCGATGGGCGGTGGCGGCGACGAAGGCGGTTACAGCCGGGGTGAGCCGTCGGAGCGTAGCG
GCGGTGGTGGTGGCGGTCGCGCGGCGTCGGGCGGTGGCTCGCGTGGCGGCAGCGGTGGTGGTGCCGGCGGCGGCGCGAGC
CGTCCGAGCGCGCCGGCTGGCGGCGGGTTTGATGAGATGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q4Z8Z3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

49.73

100

0.514
  ssb Glaesserella parasuis strain SC1401

45.556

100

0.458
  ssb Neisseria meningitidis MC58

44.068

98.883

0.436
  ssb Neisseria gonorrhoeae MS11

42.938

98.883

0.425
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.288

98.883

0.369

Multiple sequence alignment