Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   QOY30_RS17230 Genome accession   NZ_LR699166
Coordinates   3601290..3602780 (+) Length   496 a.a.
NCBI ID   WP_283745851.1    Uniprot ID   -
Organism   Sideroxydans sp. CL21 isolate Sideroxydans sp. CL21     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3596290..3607780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOY30_RS17205 (SIDCL21_3623) - 3597483..3597821 (-) 339 WP_283745847.1 P-II family nitrogen regulator -
  QOY30_RS17210 (SIDCL21_3625) - 3598124..3599629 (-) 1506 WP_283745848.1 ammonium transporter -
  QOY30_RS17215 (SIDCL21_3626) glnK 3599641..3599979 (-) 339 WP_013028206.1 P-II family nitrogen regulator -
  QOY30_RS17220 (SIDCL21_3627) - 3600045..3600842 (-) 798 WP_283745849.1 TorF family putative porin -
  QOY30_RS17225 (SIDCL21_3628) - 3601074..3601286 (+) 213 WP_283745850.1 accessory factor UbiK family protein -
  QOY30_RS17230 (SIDCL21_3629) comM 3601290..3602780 (+) 1491 WP_283745851.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  QOY30_RS17235 (SIDCL21_3630) - 3602792..3603247 (-) 456 WP_283745852.1 bacteriohemerythrin -
  QOY30_RS17240 (SIDCL21_3631) metH 3603407..3607126 (+) 3720 WP_283745853.1 methionine synthase -
  QOY30_RS17245 (SIDCL21_3632) - 3607136..3607780 (+) 645 WP_283745854.1 FMN-binding negative transcriptional regulator -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53788.69 Da        Isoelectric Point: 7.2683

>NTDB_id=1129332 QOY30_RS17230 WP_283745851.1 3601290..3602780(+) (comM) [Sideroxydans sp. CL21 isolate Sideroxydans sp. CL21]
MGLAVLYSRGLAGMDAALVTVEVHLANGLPNFTIVGLPETEVKESKDRVRAALQNCQFEFPARRITVNLAPADLPKESGR
FDLPIALGILAASGQIPSDKLAEYEYAGELALTGELRAIRGALAMTYRAANSGRAFILPAINAPEAALVEDAVVYPAQSL
LQVAAHLAGRDALTRHVPDTQAAVLHYPDMRDVKGQAQCKRALEIAAAGGHSVLMSGPPGTGKSMLAARFPGLLPQMTQQ
EALESAAMQSLGGMFEVENWKRRPYRSPHHTASAVAMVGGGSNPRPGEISVAMHGVLFLDELPEFDRGVLEVLREPLESG
RITISRAARRADFRAQFQLVAAMNPCPCGYLGHYNGKCRCTPDQISRYRGKISGPLLDRIDIQIEVPAVPQEDLLKQADG
EHSAPIQARAEDARQRQLVRQDKPNALLSVAEIDTWCAPDTKGETLLRQAITRLDLSARAYHRILKVARTIADLADSENI
LAVHIAEAVQYRRMSF

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=1129332 QOY30_RS17230 WP_283745851.1 3601290..3602780(+) (comM) [Sideroxydans sp. CL21 isolate Sideroxydans sp. CL21]
ATGGGGCTGGCTGTTTTATACAGTCGCGGTCTGGCGGGGATGGACGCCGCGCTGGTCACCGTTGAGGTGCACCTTGCAAA
CGGATTGCCCAATTTCACTATCGTCGGCCTGCCCGAGACCGAGGTGAAGGAAAGCAAGGACCGCGTCCGCGCGGCATTGC
AGAATTGCCAGTTTGAGTTTCCCGCACGGCGTATCACCGTCAACCTTGCCCCTGCCGATCTGCCAAAAGAGAGCGGACGT
TTCGATCTGCCTATCGCGCTGGGCATTCTGGCTGCGTCCGGCCAGATACCTTCCGACAAACTTGCCGAATATGAGTATGC
GGGCGAACTGGCGCTGACCGGCGAGTTGCGCGCCATACGCGGCGCCCTGGCGATGACCTACCGCGCCGCGAACAGTGGAC
GCGCATTTATCCTGCCCGCCATTAATGCACCCGAGGCTGCACTGGTTGAAGATGCTGTTGTCTATCCCGCTCAATCGCTG
CTGCAGGTGGCTGCCCATCTTGCGGGACGCGATGCCTTGACCCGCCATGTACCCGATACGCAAGCCGCCGTTCTTCACTA
CCCCGACATGCGCGATGTCAAAGGTCAGGCGCAATGCAAGCGCGCACTGGAAATCGCCGCGGCAGGCGGGCACAGCGTGC
TGATGTCTGGCCCGCCCGGAACGGGCAAGAGCATGCTGGCCGCTCGCTTCCCCGGCCTCCTGCCGCAAATGACGCAGCAG
GAAGCATTGGAAAGTGCCGCCATGCAATCCCTGGGCGGTATGTTCGAAGTGGAAAACTGGAAACGCAGGCCTTACCGTTC
GCCCCATCATACGGCCTCGGCCGTTGCAATGGTCGGCGGCGGCAGCAATCCGCGTCCCGGTGAAATCTCGGTCGCCATGC
ATGGCGTTTTATTCCTGGATGAACTGCCGGAATTCGACCGGGGTGTACTGGAAGTGCTGCGGGAACCCCTGGAAAGCGGA
CGCATCACCATCTCGCGAGCGGCACGCCGGGCAGATTTCCGTGCCCAATTCCAACTGGTTGCCGCGATGAACCCGTGTCC
CTGCGGTTATCTCGGGCACTACAATGGCAAGTGCCGCTGCACACCGGACCAGATTTCGCGCTATCGCGGCAAGATATCCG
GTCCTTTGCTGGATCGCATCGACATCCAGATTGAAGTGCCCGCCGTGCCGCAGGAGGATTTGCTCAAACAGGCTGACGGC
GAACACAGTGCGCCGATACAGGCCAGGGCAGAAGACGCGCGGCAGCGGCAGCTTGTGCGCCAAGACAAACCCAACGCGCT
GCTTTCCGTCGCCGAAATAGATACATGGTGCGCGCCCGATACGAAGGGAGAGACACTGCTGCGCCAAGCCATCACTCGTC
TGGATCTTTCAGCCCGCGCTTATCACCGGATACTCAAGGTAGCGCGCACTATCGCCGACCTTGCCGACAGCGAAAACATA
CTGGCGGTTCATATCGCCGAAGCAGTGCAATATCGGCGCATGAGCTTTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-393)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.509

100

0.548
  comM Vibrio campbellii strain DS40M4

54.618

100

0.548
  comM Glaesserella parasuis strain SC1401

53.386

100

0.54
  comM Haemophilus influenzae Rd KW20

52.988

100

0.536
  comM Legionella pneumophila str. Paris

50.704

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.704

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.032

100

0.468

Multiple sequence alignment