Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FYC31_RS03415 Genome accession   NZ_LR699009
Coordinates   729521..731041 (+) Length   506 a.a.
NCBI ID   WP_048254801.1    Uniprot ID   -
Organism   Pluralibacter gergoviae isolate MGYG-HGUT-02520     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 724521..736041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FYC31_RS03395 - 726114..727043 (-) 930 WP_106912766.1 branched-chain amino acid transaminase -
  FYC31_RS03400 ilvM 727061..727324 (-) 264 WP_043081548.1 acetolactate synthase 2 small subunit -
  FYC31_RS03405 ilvG 727321..728967 (-) 1647 WP_048254802.1 acetolactate synthase 2 catalytic subunit -
  FYC31_RS03410 ilvL 729107..729205 (-) 99 WP_001311244.1 ilv operon leader peptide -
  FYC31_RS03415 comM 729521..731041 (+) 1521 WP_048254801.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FYC31_RS03420 - 731066..731404 (-) 339 WP_043081544.1 DUF413 domain-containing protein -
  FYC31_RS03425 hdfR 731523..732344 (+) 822 WP_043081543.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54459.89 Da        Isoelectric Point: 8.8330

>NTDB_id=1129186 FYC31_RS03415 WP_048254801.1 729521..731041(+) (comM) [Pluralibacter gergoviae isolate MGYG-HGUT-02520]
MSLAIVYTRAALGVNAPPITVEVHISSGLPGLTLVGLPETAVKESRDRVRSAIITSGYEFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLKTGNLSQYELIGELALTGALRGVSGAISGAVEAIAAGRRIILPAENGPEAGLLDDARCYVAAHL
QEVCAFLEGKAGLDNPVALLPDVRDGEACLSEVIGQQQGKRALEITAAGGHNVLLIGPPGTGKTMLAARLPGILPPLSNE
EALQSAAIMSLLSASRVQQQWRKRPFRSPHHSASLAAMVGGGSIPLPGEISLAHNGILFLDELPEFERRVLDALREPIES
GKVHISRTRAKITYPARFQLIAAMNPSPTGHYQGQHNRCSPEQTMRYLARLSGPFLDRFDLSLEIPLPPAGLLSQPRTEG
ERSAEVKKRVIAARDRQMARQGRLNALLGSSQISEYCALRNEDAVWLEETLVRLGLSIRAWQRLLKVSRTIADLAGVEQI
TRAHLQEALGYRAVERLLAHLQKMIA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1129186 FYC31_RS03415 WP_048254801.1 729521..731041(+) (comM) [Pluralibacter gergoviae isolate MGYG-HGUT-02520]
ATGTCACTGGCAATAGTTTACACGCGCGCCGCGCTCGGCGTGAATGCGCCCCCGATAACCGTTGAGGTTCATATCAGCAG
CGGTCTTCCCGGACTGACGCTGGTCGGCCTGCCGGAAACGGCGGTGAAGGAGTCCCGGGATCGGGTGCGCAGCGCCATCA
TCACCAGCGGGTACGAGTTTCCGGCAAAAAAGATAACTATCAATCTCGCCCCGGCCGACCTGCCGAAAGAGGGAGGACGA
TACGATCTGCCCATCGCCATCGCGCTTCTGGCGGCTTCTGAGCAGCTTAAGACCGGCAATCTGTCCCAGTACGAGCTGAT
AGGCGAACTGGCGCTTACGGGCGCACTACGCGGCGTCAGCGGTGCGATTTCGGGTGCCGTAGAGGCCATTGCCGCCGGGC
GGCGGATCATCCTGCCGGCGGAGAACGGGCCGGAGGCCGGGCTGCTGGACGATGCCCGCTGCTATGTTGCCGCCCATCTG
CAGGAGGTGTGCGCTTTTCTGGAGGGAAAGGCCGGGCTTGATAACCCCGTAGCGCTGCTGCCGGATGTTCGCGACGGCGA
GGCCTGCCTCAGTGAGGTTATCGGGCAGCAGCAGGGGAAGCGCGCGCTGGAGATAACCGCGGCGGGCGGACATAACGTGC
TGCTGATCGGCCCTCCGGGCACCGGGAAGACCATGCTTGCCGCCCGCCTGCCCGGGATACTTCCGCCGCTCAGCAACGAA
GAAGCGCTGCAGAGCGCCGCCATCATGAGCCTGCTCAGCGCAAGCCGCGTTCAGCAGCAGTGGCGAAAGCGCCCGTTCCG
CTCTCCTCACCACAGCGCATCGCTGGCCGCGATGGTCGGCGGCGGCTCAATTCCCTTGCCCGGCGAGATCTCACTGGCCC
ACAACGGTATTCTGTTCCTCGATGAGCTACCCGAATTCGAGCGCCGCGTGCTTGACGCGCTGCGGGAGCCGATTGAGTCC
GGCAAGGTACATATTTCACGAACCCGGGCAAAGATCACTTACCCGGCGCGCTTTCAGCTGATTGCGGCCATGAACCCCAG
CCCGACGGGACACTATCAGGGACAGCACAATCGCTGTTCGCCGGAACAGACAATGCGCTACCTCGCACGGTTGTCCGGCC
CTTTTCTTGACCGTTTCGATCTCTCGCTGGAGATCCCGCTGCCCCCGGCAGGGCTACTGAGCCAGCCGCGGACGGAAGGC
GAGCGCAGCGCCGAGGTGAAAAAGCGGGTCATCGCGGCCCGGGACAGGCAGATGGCGCGCCAGGGCAGGCTCAATGCCCT
GCTTGGCAGCAGCCAGATTAGCGAATACTGCGCGCTGCGTAACGAAGACGCCGTCTGGCTTGAAGAGACGCTGGTCAGAC
TGGGATTGTCGATCAGGGCGTGGCAGCGGCTGCTGAAGGTATCGCGCACCATTGCCGATCTGGCGGGAGTGGAGCAGATT
ACGCGGGCACATCTTCAGGAGGCCCTGGGCTATCGCGCCGTCGAACGGCTTCTCGCCCATCTGCAGAAAATGATCGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

59.486

100

0.595
  comM Glaesserella parasuis strain SC1401

58.58

100

0.587
  comM Haemophilus influenzae Rd KW20

57.564

100

0.579
  comM Vibrio campbellii strain DS40M4

58.135

99.605

0.579
  comM Legionella pneumophila str. Paris

49.497

98.221

0.486
  comM Legionella pneumophila strain ERS1305867

49.497

98.221

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.922

100

0.455

Multiple sequence alignment