Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   FQT67_RS02840 Genome accession   NZ_LR595857
Coordinates   528653..529363 (+) Length   236 a.a.
NCBI ID   WP_003049952.1    Uniprot ID   A0A9X9SIG1
Organism   Streptococcus sp. NCTC 11567 strain NCTC11567     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 523653..534363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQT67_RS02815 (NCTC11567_00580) - 524332..525327 (+) 996 WP_042357864.1 DUF3114 domain-containing protein -
  FQT67_RS02820 (NCTC11567_00581) - 525423..526070 (-) 648 WP_046177436.1 amino acid ABC transporter permease -
  FQT67_RS02825 (NCTC11567_00582) - 526085..526786 (-) 702 WP_003057191.1 amino acid ABC transporter permease -
  FQT67_RS02830 (NCTC11567_00583) - 526800..527600 (-) 801 WP_003057243.1 transporter substrate-binding domain-containing protein -
  FQT67_RS02835 (NCTC11567_00584) - 527600..528394 (-) 795 WP_003057217.1 amino acid ABC transporter ATP-binding protein -
  FQT67_RS02840 (NCTC11567_00585) vicR 528653..529363 (+) 711 WP_003049952.1 response regulator YycF Regulator
  FQT67_RS02845 (NCTC11567_00586) vicK 529356..530708 (+) 1353 WP_003060939.1 cell wall metabolism sensor histidine kinase VicK Regulator
  FQT67_RS02850 (NCTC11567_00587) vicX 530712..531521 (+) 810 WP_115256786.1 MBL fold metallo-hydrolase Regulator
  FQT67_RS02855 (NCTC11567_00588) - 531602..532477 (-) 876 WP_046177434.1 helix-turn-helix transcriptional regulator -
  FQT67_RS02865 (NCTC11567_00590) - 533162..534178 (-) 1017 WP_143936365.1 IS30 family transposase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27029.90 Da        Isoelectric Point: 4.9981

>NTDB_id=1128421 FQT67_RS02840 WP_003049952.1 528653..529363(+) (vicR) [Streptococcus sp. NCTC 11567 strain NCTC11567]
MKKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTVFEDEKPDLIILDLMLPELDGLEVAKEIRKTSHVPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETIETAVAEENASSGSQELTIGNLQILPDAFVAKKHGKEVE
LTHREFELLHHLANHMGQVMTREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMKSYD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1128421 FQT67_RS02840 WP_003049952.1 528653..529363(+) (vicR) [Streptococcus sp. NCTC 11567 strain NCTC11567]
ATGAAAAAAATACTGATTGTGGATGATGAAAAACCGATTTCTGACATTATTAAGTTTAACTTGACAAAAGAAGGTTATGA
CATTGTGACCGCTTTTGATGGCCGTGAAGCTGTTACCGTGTTTGAAGACGAAAAACCGGATTTAATTATTCTTGATTTGA
TGTTACCGGAATTGGACGGTCTTGAAGTGGCCAAAGAAATCCGTAAAACCAGTCATGTGCCGATTATTATGCTGTCGGCT
AAGGATAGTGAGTTTGACAAGGTCATTGGCCTTGAAATTGGGGCAGATGATTATGTTACCAAACCTTTTTCAAATCGTGA
ACTATTAGCGCGTGTCAAGGCTCATTTACGTCGAACAGAAACGATCGAAACAGCCGTAGCAGAGGAAAATGCTTCTTCAG
GTTCACAAGAGTTAACCATTGGTAATTTACAAATTTTACCAGATGCTTTTGTGGCTAAAAAACATGGCAAAGAAGTGGAA
TTAACCCATCGTGAATTTGAATTATTACACCACCTGGCCAATCATATGGGTCAAGTGATGACACGAGAGCACTTGCTTGA
GACGGTTTGGGGCTATGATTACTTTGGCGATGTCCGTACTGTTGACGTGACGGTTCGTCGTCTGCGTGAAAAAATTGAAG
ACACACCAAGCCGTCCCGAATATATTTTAACGAGACGCGGTGTTGGGTACTACATGAAATCTTATGACTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

90.254

100

0.903
  micA Streptococcus pneumoniae Cp1015

79.487

99.153

0.788
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.828

98.305

0.441
  covR Streptococcus salivarius strain HSISS4

44.397

98.305

0.436
  scnR Streptococcus mutans UA159

37.712

100

0.377

Multiple sequence alignment