Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   WDLP6_RS01150 Genome accession   NZ_LR594671
Coordinates   239783..241324 (-) Length   513 a.a.
NCBI ID   WP_162590869.1    Uniprot ID   -
Organism   Variovorax sp. PBL-E5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 234783..246324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDLP6_RS01125 (E5CHR_00226) - 234958..235653 (+) 696 WP_162565349.1 amino acid ABC transporter permease -
  WDLP6_RS01130 (E5CHR_00227) - 235646..236308 (+) 663 WP_162590865.1 amino acid ABC transporter permease -
  WDLP6_RS01135 (E5CHR_00228) - 236501..237610 (+) 1110 WP_162590866.1 ABC transporter substrate-binding protein -
  WDLP6_RS01140 (G3W90_RS01135) - 237738..238151 (-) 414 WP_232076930.1 hypothetical protein -
  WDLP6_RS01145 (E5CHR_00229) - 238668..239417 (-) 750 WP_162590868.1 TIGR04255 family protein -
  WDLP6_RS01150 (E5CHR_00230) comM 239783..241324 (-) 1542 WP_162590869.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  WDLP6_RS01155 (E5CHR_00231) - 241483..242304 (+) 822 WP_162594928.1 TorF family putative porin -
  WDLP6_RS01160 (E5CHR_00232) glnK 242365..242703 (+) 339 WP_162565354.1 P-II family nitrogen regulator -
  WDLP6_RS01165 (E5CHR_00233) amt 242730..244262 (+) 1533 WP_174259833.1 ammonium transporter -
  WDLP6_RS01170 (E5CHR_00234) - 244425..245345 (+) 921 WP_162590870.1 SMP-30/gluconolactonase/LRE family protein -

Sequence

Protein


Download         Length: 513 a.a.        Molecular weight: 53378.37 Da        Isoelectric Point: 8.6549

>NTDB_id=1128218 WDLP6_RS01150 WP_162590869.1 239783..241324(-) (comM) [Variovorax sp. PBL-E5]
MSLSLVQSRALLGLEAASVTVEVHLANGLPSFTLVGLADVEVKEARERVRSAIQNAGLEFPNNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQIEASRLAGNEFAGELSLSGQLRPVRGALAMALALHMGGIATRLVLPADSAREAALVPGAEVYGA
AHLLDVVRQFLAADAAQPLPEAGADGWARVVPQAARPAARPADLADVKGHAGAKRALEIAAAGNHSLLMVGPPGSGKSML
AQRFAGVLPAMSVDEALESAAIASLGGRFAVERWMCRPTVSPHHTASAVALVGGGSPPRPGEISLAHHGVLFLDEFPEFT
RSALEALREPLETGSITIARAARRAEFPARFQLIAAMNPCPCGYLGSTLKACRCTPDQVLRYQGKLSGPLLDRIDLHIEV
PAVSAQQLLDAPAGEATEGIRARVAAARAFALARQGKPNQALQGTEIDRHAALEPAALKFMHAAAARLGWSARSTHRALK
VARTIADLAGAGEMQAAHVAEAVQYRRALGAAG

Nucleotide


Download         Length: 1542 bp        

>NTDB_id=1128218 WDLP6_RS01150 WP_162590869.1 239783..241324(-) (comM) [Variovorax sp. PBL-E5]
ATGAGTCTGTCTTTGGTGCAGAGCCGTGCCTTGCTGGGCCTGGAAGCCGCGAGCGTCACGGTCGAGGTGCATCTGGCCAA
CGGCCTGCCGAGCTTCACGCTGGTAGGCCTGGCCGATGTCGAAGTGAAGGAAGCGCGCGAACGCGTGCGCTCGGCGATCC
AGAACGCCGGGCTCGAATTCCCCAACAACAAGCGCATCACGGTGAACCTCGCGCCGGCCGACCTGCCGAAGGATTCGGGC
CGCTTCGATCTGCCGATCGCGCTCGGGATCCTCGCGGCGAGCGGCCAGATCGAGGCGTCGCGGCTCGCGGGTAACGAGTT
CGCAGGCGAGCTCTCGCTATCGGGTCAGCTCAGGCCCGTGCGCGGCGCGCTCGCGATGGCGCTGGCGCTGCACATGGGCG
GGATCGCCACGCGGCTGGTGCTGCCCGCCGACAGCGCCCGGGAGGCCGCGCTGGTGCCAGGCGCCGAGGTGTATGGCGCC
GCGCACCTGCTCGACGTCGTACGGCAGTTTCTGGCGGCCGATGCAGCCCAGCCGCTGCCCGAAGCCGGCGCAGACGGATG
GGCGCGGGTTGTGCCGCAGGCCGCGCGACCGGCGGCGCGCCCCGCCGATCTCGCCGATGTGAAAGGGCATGCAGGCGCCA
AGCGCGCCCTCGAAATCGCGGCCGCCGGCAACCACAGCCTGCTGATGGTCGGACCGCCGGGCTCCGGCAAGTCCATGCTG
GCCCAGCGCTTCGCCGGTGTGCTGCCGGCGATGAGCGTCGACGAAGCGCTCGAAAGCGCTGCCATCGCCAGCCTGGGCGG
CCGCTTCGCGGTCGAGCGCTGGATGTGCCGGCCGACGGTGAGCCCGCATCACACCGCCAGCGCCGTGGCCCTCGTCGGCG
GTGGCTCGCCGCCGCGGCCGGGCGAGATCTCGCTGGCGCACCACGGCGTGCTCTTTCTCGACGAGTTTCCCGAGTTCACG
CGCTCCGCGCTCGAGGCGCTGCGCGAGCCGCTGGAAACCGGCAGCATCACGATCGCGCGCGCCGCGCGCCGGGCCGAATT
TCCCGCGCGCTTCCAGTTGATCGCGGCCATGAACCCGTGTCCGTGCGGCTACCTCGGCTCGACGCTCAAGGCCTGCCGCT
GCACGCCGGACCAGGTGCTGCGCTACCAGGGCAAGCTCAGCGGTCCCCTGCTCGACCGCATCGATCTGCACATCGAAGTG
CCCGCGGTCTCGGCGCAGCAGTTGCTCGACGCGCCGGCCGGCGAAGCGACCGAAGGCATCCGTGCGCGCGTGGCGGCGGC
GCGCGCGTTCGCGCTGGCGCGACAGGGCAAGCCCAACCAGGCGCTGCAAGGCACCGAGATCGACCGCCATGCCGCGCTCG
AGCCGGCAGCGTTGAAGTTCATGCACGCGGCCGCGGCAAGGCTCGGCTGGTCGGCGCGCAGCACGCACCGCGCGCTGAAG
GTCGCGCGCACGATCGCCGACCTGGCCGGCGCCGGCGAGATGCAGGCCGCGCATGTGGCGGAGGCGGTTCAGTATCGGCG
GGCGTTGGGCGCGGCGGGATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(203-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.778

100

0.509
  comM Glaesserella parasuis strain SC1401

50.98

99.415

0.507
  comM Haemophilus influenzae Rd KW20

50

99.415

0.497
  comM Vibrio campbellii strain DS40M4

49.803

99.025

0.493
  comM Legionella pneumophila str. Paris

46.99

100

0.472
  comM Legionella pneumophila strain ERS1305867

46.99

100

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.984

98.83

0.435

Multiple sequence alignment