Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G3W89_RS26450 Genome accession   NZ_LR594659
Coordinates   5610036..5610566 (-) Length   176 a.a.
NCBI ID   WP_162576930.1    Uniprot ID   A0A6P2FIR2
Organism   Variovorax sp. PBL-H6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5605036..5615566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3W89_RS26435 (H6CHR_05279) - 5605980..5608199 (-) 2220 WP_162576927.1 polysaccharide biosynthesis tyrosine autokinase -
  G3W89_RS26440 (H6CHR_05280) - 5608196..5608675 (-) 480 WP_162576928.1 low molecular weight protein-tyrosine-phosphatase -
  G3W89_RS26445 (H6CHR_05281) - 5608672..5609643 (-) 972 WP_232076762.1 polysaccharide biosynthesis/export family protein -
  G3W89_RS26450 (H6CHR_05282) ssb 5610036..5610566 (-) 531 WP_162576930.1 single-stranded DNA-binding protein Machinery gene
  G3W89_RS26455 (H6CHR_05283) - 5610687..5612063 (+) 1377 WP_162576931.1 chloride channel protein -
  G3W89_RS26460 (H6CHR_05284) uvrA 5612177..5615173 (+) 2997 WP_197893614.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18891.86 Da        Isoelectric Point: 5.9477

>NTDB_id=1128176 G3W89_RS26450 WP_162576930.1 5610036..5610566(-) (ssb) [Variovorax sp. PBL-H6]
MASVNKVILVGNLGRDPETRTFPSGDQICNVTLATTDKWKDKQSGEMREATEWHRLVFNGRLAEIAAQYLRKGSQIYVEG
QIRTRKYTDKDGVEKYATDIRVDQMQMLGSRQGQGAPSGEDDGGYGGGYSQGGGGGGGYSRPPAAAPRPPAASPAARQTP
AKSSSGFDDMDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=1128176 G3W89_RS26450 WP_162576930.1 5610036..5610566(-) (ssb) [Variovorax sp. PBL-H6]
ATGGCATCGGTCAACAAAGTCATCCTCGTCGGCAACCTCGGGCGGGACCCGGAAACCCGCACCTTCCCGAGCGGTGACCA
GATCTGCAACGTGACCCTCGCCACCACCGACAAGTGGAAGGACAAGCAGAGCGGCGAAATGCGTGAAGCCACCGAGTGGC
ACCGCCTCGTATTCAATGGCCGTCTGGCCGAGATCGCGGCGCAGTACCTGCGCAAGGGCTCGCAGATCTATGTCGAGGGC
CAGATCCGCACGCGCAAGTACACCGACAAGGACGGCGTCGAGAAGTACGCCACCGACATCCGCGTCGACCAGATGCAGAT
GCTGGGCAGCCGCCAGGGGCAGGGTGCACCCTCGGGCGAGGACGACGGCGGCTATGGCGGTGGGTATTCGCAGGGTGGCG
GTGGTGGTGGCGGCTACTCGCGCCCACCCGCCGCGGCACCGCGCCCACCGGCCGCCTCGCCGGCTGCACGCCAGACGCCT
GCCAAGTCCTCGTCCGGCTTCGACGACATGGACGACGACATTCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P2FIR2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

46.842

100

0.506
  ssb Neisseria meningitidis MC58

45.652

100

0.477
  ssb Vibrio cholerae strain A1552

45.055

100

0.466
  ssb Neisseria gonorrhoeae MS11

45.198

100

0.455

Multiple sequence alignment