Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   FGL23_RS02965 Genome accession   NZ_LR594049
Coordinates   636672..637337 (+) Length   221 a.a.
NCBI ID   WP_138115419.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC10231     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 631672..642337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL23_RS02940 (NCTC10231_00585) - 631837..633240 (+) 1404 WP_061603670.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  FGL23_RS02945 (NCTC10231_00586) - 633237..633623 (+) 387 WP_060552930.1 S1 RNA-binding domain-containing protein -
  FGL23_RS02950 (NCTC10231_00587) cysK 633659..634588 (-) 930 WP_061603671.1 cysteine synthase A -
  FGL23_RS02955 (NCTC10231_00588) - 634686..635318 (-) 633 WP_045772978.1 YigZ family protein -
  FGL23_RS02960 (NCTC10231_00589) comFA/cflA 635374..636675 (+) 1302 WP_061603672.1 DEAD/DEAH box helicase Machinery gene
  FGL23_RS02965 (NCTC10231_00590) comFC/cflB 636672..637337 (+) 666 WP_138115419.1 ComF family protein Machinery gene
  FGL23_RS02970 (NCTC10231_00591) hpf 637422..637964 (+) 543 WP_012000104.1 ribosome hibernation-promoting factor, HPF/YfiA family -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25955.84 Da        Isoelectric Point: 8.0591

>NTDB_id=1127956 FGL23_RS02965 WP_138115419.1 636672..637337(+) (comFC/cflB) [Streptococcus gordonii strain NCTC10231]
MRQCLLCLSLLEEQLNFIDLLQLKRRENNVCQECLNTFEEIPEEHCPSCYKAGDKNLCQDCQYWQERGLEVAHKSLYTYN
KAMKDYFSRYKFQGDYLLRNVFALSIRRELKKYQSYTILSIPLSESKMKTRGFNQVSGLLEAAQIPYQELLKKKESQTQS
SKDRKERLENTGNFYMIENTKIPQKILLVDDIYTTGATLQDAKMTLFENGAKEIMTFSLAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=1127956 FGL23_RS02965 WP_138115419.1 636672..637337(+) (comFC/cflB) [Streptococcus gordonii strain NCTC10231]
ATGAGACAATGTCTACTCTGCTTATCCCTATTAGAAGAGCAGTTAAATTTTATAGATTTATTACAATTAAAAAGAAGAGA
AAATAACGTTTGTCAAGAATGCTTAAATACCTTCGAAGAAATTCCAGAAGAACATTGTCCAAGCTGTTATAAAGCTGGGG
ACAAAAACTTGTGCCAAGATTGTCAGTACTGGCAGGAAAGAGGGTTAGAAGTGGCTCATAAAAGTTTGTACACTTATAAT
AAGGCTATGAAAGACTATTTTAGTCGTTACAAATTTCAAGGAGATTACCTATTAAGAAATGTGTTTGCCTTAAGTATAAG
AAGAGAATTAAAAAAATACCAAAGTTACACAATTTTAAGCATTCCTTTAAGTGAAAGTAAGATGAAAACAAGAGGATTCA
ATCAAGTGTCTGGATTGCTTGAAGCTGCACAGATACCTTATCAAGAACTATTAAAGAAAAAAGAAAGCCAGACTCAGTCT
AGTAAAGACAGAAAAGAGAGATTAGAAAACACAGGTAATTTTTACATGATTGAAAATACGAAAATCCCACAAAAAATTTT
ACTTGTAGATGACATCTATACAACAGGTGCAACCTTACAGGATGCAAAAATGACATTATTTGAAAACGGAGCGAAAGAAA
TCATGACATTTTCACTAGCAAGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae TIGR4

51.142

99.095

0.507
  comFC/cflB Streptococcus pneumoniae Rx1

50.685

99.095

0.502
  comFC/cflB Streptococcus pneumoniae D39

50.685

99.095

0.502
  comFC/cflB Streptococcus pneumoniae R6

50.685

99.095

0.502
  comFC/cflB Streptococcus mitis NCTC 12261

50.685

99.095

0.502
  comFC/cflB Streptococcus mitis SK321

50.228

99.095

0.498

Multiple sequence alignment