Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   FGL18_RS01965 Genome accession   NZ_LR594046
Coordinates   368936..370906 (+) Length   656 a.a.
NCBI ID   WP_129555301.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain NCTC6403     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 363936..375906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL18_RS01945 (NCTC6403_00398) sufU 363985..364461 (+) 477 WP_003062583.1 Fe-S cluster assembly sulfur transfer protein SufU -
  FGL18_RS01950 (NCTC6403_00399) sufB 364454..365872 (+) 1419 WP_003054855.1 Fe-S cluster assembly protein SufB -
  FGL18_RS01955 (NCTC6403_00400) - 366046..367227 (-) 1182 WP_129555299.1 serine hydrolase -
  FGL18_RS01960 (NCTC6403_00401) pbp3 367366..368604 (-) 1239 WP_138124800.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  FGL18_RS01965 (NCTC6403_00402) amiA 368936..370906 (+) 1971 WP_129555301.1 peptide ABC transporter substrate-binding protein Regulator
  FGL18_RS01970 (NCTC6403_00403) amiC 370972..372474 (+) 1503 WP_138124802.1 ABC transporter permease Regulator
  FGL18_RS01975 (NCTC6403_00404) amiD 372474..373400 (+) 927 WP_003049687.1 oligopeptide ABC transporter permease OppC Regulator
  FGL18_RS01980 (NCTC6403_00405) amiE 373409..374479 (+) 1071 WP_003057822.1 ABC transporter ATP-binding protein Regulator
  FGL18_RS01985 (NCTC6403_00406) amiF 374472..375395 (+) 924 WP_138124804.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 71974.27 Da        Isoelectric Point: 4.9448

>NTDB_id=1127782 FGL18_RS01965 WP_129555301.1 368936..370906(+) (amiA) [Streptococcus dysgalactiae strain NCTC6403]
MKKSRWLATLGVAVLSVSVLAACGGKNASGGSDATKAYKYVFVNDPKSLDYILTNGGGTTDVATQMVDGLLENDEYGNLV
PSLAKDWKVSKDGLTYTYTLRDGVSWYTADGEEYAPVTAEDFVTGLKHAIDGKSEALYVVEDSIKNLKAYQNGEVDFKEV
GVKALDDKTVQYTLNKPESYWNSKTTYSVLFPVNAKFLKSQGKEFGTTDPSSILVNGAYFLSAFTSKSSMEFHKNENYWD
AKNVGIESVKLTYSDGSDPGSFYKNFDKGEFSVARLYPNDPTYKSAKKNYADNITYGMLTGDIRHLTWNLNRTSFKNTKK
DPAQQDAGKKALNNKDFRQAIQFAFDRASFQAQTAGQDAKTKALRNMLVPPTFVTIGENDFGSEVEKDLATMGDEWKDVN
LKDAQDGFYNPEKAKAEFAKAKEALTAEGVTFPVQLDYPVDQANAATVQEAQSFKQSVEASLGKENVVVNVLETETSTHE
AQGFYAETPEQQDYDIISSWWGPDYQDPRTYLDIMSPVDGGSVIQKLGVKAGESKDVVAATGLDTYQTLLDEAAAITDDN
DARYKAYAKAQAYLTDSAVDIPVVALGGTPRVSKAIPFSGGFSWAGAKGPLAYKGMKLQDKPVTAKQYEKAKEKWLKAKA
KSNADYAEKLADHVEK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=1127782 FGL18_RS01965 WP_129555301.1 368936..370906(+) (amiA) [Streptococcus dysgalactiae strain NCTC6403]
ATGAAGAAAAGTAGATGGTTAGCAACTCTAGGTGTTGCGGTATTATCAGTATCCGTTTTAGCAGCTTGTGGTGGCAAAAA
TGCCTCAGGCGGTTCAGATGCAACTAAAGCTTACAAATATGTGTTTGTTAACGATCCAAAATCGTTGGATTACATTTTAA
CAAATGGTGGCGGAACAACTGATGTGGCAACGCAAATGGTTGATGGTCTTTTGGAAAATGATGAGTATGGTAACTTGGTA
CCATCACTTGCTAAAGATTGGAAAGTTTCAAAAGATGGCCTAACCTATACTTATACTCTTCGTGATGGTGTTTCTTGGTA
CACGGCTGATGGTGAAGAATACGCACCTGTAACAGCAGAAGATTTTGTGACTGGTCTTAAACACGCGATTGATGGCAAGT
CTGAAGCTTTATATGTTGTCGAAGACTCCATCAAAAATTTGAAAGCTTACCAAAATGGTGAGGTCGATTTCAAAGAGGTC
GGTGTTAAAGCCCTTGACGATAAAACCGTTCAATATACTTTGAACAAACCGGAAAGTTACTGGAACTCAAAAACAACTTA
TAGCGTTCTCTTCCCAGTCAATGCGAAATTCTTGAAATCACAAGGTAAAGAGTTTGGGACAACAGATCCATCATCAATCC
TTGTTAATGGTGCTTATTTCTTGAGTGCCTTCACCTCAAAATCATCTATGGAATTCCATAAAAATGAAAACTATTGGGAT
GCTAAGAATGTTGGGATAGAATCTGTTAAATTGACTTACTCAGATGGTTCAGACCCAGGTTCTTTCTACAAGAACTTTGA
CAAGGGTGAGTTCAGTGTTGCACGACTTTACCCAAATGACCCTACTTACAAATCAGCTAAGAAAAACTATGCTGATAACA
TTACTTATGGAATGTTGACTGGTGATATCCGTCATTTAACATGGAACTTGAACCGTACTTCTTTCAAAAATACTAAGAAA
GACCCTGCACAACAAGATGCCGGTAAGAAAGCTCTTAACAACAAGGACTTCCGTCAAGCTATCCAGTTTGCTTTTGACCG
TGCATCATTCCAAGCACAAACTGCAGGTCAAGATGCCAAAACAAAAGCCTTACGTAACATGCTTGTGCCACCAACTTTTG
TGACCATCGGAGAAAATGACTTTGGTTCAGAAGTTGAAAAAGACCTTGCTACCATGGGTGATGAATGGAAAGATGTTAAT
TTAAAAGATGCTCAAGATGGATTTTATAATCCTGAAAAAGCAAAAGCTGAGTTTGCAAAAGCCAAAGAAGCTTTGACAGC
TGAAGGGGTAACCTTCCCAGTTCAATTAGATTATCCTGTTGACCAAGCCAACGCAGCAACTGTTCAAGAGGCTCAATCCT
TTAAACAATCTGTTGAAGCATCACTTGGTAAAGAAAATGTTGTTGTCAATGTTCTTGAAACAGAAACCTCAACTCACGAA
GCTCAAGGCTTCTATGCTGAGACCCCAGAACAACAAGACTACGACATCATTTCATCATGGTGGGGTCCAGACTACCAAGA
CCCACGTACCTACCTTGACATCATGAGTCCAGTGGATGGTGGATCTGTTATCCAAAAACTGGGAGTTAAAGCAGGTGAAA
GCAAAGATGTTGTGGCAGCTACAGGCCTTGATACCTACCAAACTTTACTTGACGAAGCAGCAGCGATTACAGACGATAAC
GATGCTCGTTACAAAGCTTATGCAAAAGCACAAGCCTATCTTACTGATAGTGCTGTAGATATTCCGGTTGTGGCCTTGGG
TGGTACTCCTCGTGTTTCTAAAGCTATTCCATTTAGCGGCGGCTTCTCTTGGGCAGGTGCTAAAGGACCTCTAGCATATA
AAGGAATGAAACTTCAAGACAAACCTGTTACGGCAAAACAATACGAAAAAGCAAAAGAAAAATGGTTGAAAGCAAAGGCT
AAATCAAACGCAGACTATGCTGAGAAATTAGCTGATCACGTTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(79-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

50.681

100

0.511
  amiA3 Streptococcus thermophilus LMG 18311

49.547

100

0.5
  amiA3 Streptococcus thermophilus LMD-9

49.245

100

0.497

Multiple sequence alignment