Detailed information NTG1127698

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: FGL05_RS08205
• Genome accession: NZ_LR594044
• Coordinates: 1668954..1669391 (-)
• Length: 145 a.a.
• NCBI ID: WP_043894883.1
• Uniprot ID: -
• Organism: Streptococcus lutetiensis strain NCTC8796
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1663954..1674391

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FGL05_RS08170 (NCTC8796_01722)	-	1664689..1665324 (-)	636	WP_111712559.1	type II CAAX endopeptidase family protein	-
FGL05_RS08175 (NCTC8796_01723)	-	1665339..1665794 (-)	456	WP_231853254.1	ABC transporter permease	-
FGL05_RS08180 (NCTC8796_01724)	-	1665795..1665995 (-)	201	WP_058814360.1	hypothetical protein	-
FGL05_RS08185 (NCTC8796_01725)	-	1666012..1666209 (-)	198	WP_020915996.1	helix-turn-helix transcriptional regulator	-
FGL05_RS08190 (NCTC8796_01726)	-	1666369..1667568 (-)	1200	WP_020915995.1	acetate kinase	-
FGL05_RS08195 (NCTC8796_01727)	comYH	1667622..1668578 (-)	957	WP_020915994.1	class I SAM-dependent methyltransferase	Machinery gene
FGL05_RS08200 (NCTC8796_01728)	comGG	1668632..1668982 (-)	351	WP_020915993.1	competence type IV pilus minor pilin ComGG	-
FGL05_RS08205 (NCTC8796_01729)	comYF	1668954..1669391 (-)	438	WP_043894883.1	competence type IV pilus minor pilin ComGF	Machinery gene
FGL05_RS08210 (NCTC8796_01730)	comYE	1669375..1669668 (-)	294	WP_020915991.1	competence type IV pilus minor pilin ComGE	Machinery gene
FGL05_RS08215 (NCTC8796_01731)	comYD	1669622..1670053 (-)	432	WP_020915990.1	competence type IV pilus minor pilin ComGD	Machinery gene
FGL05_RS08220 (NCTC8796_01732)	comYC	1670037..1670330 (-)	294	WP_020915989.1	competence type IV pilus major pilin ComGC	Machinery gene
FGL05_RS08225 (NCTC8796_01733)	comYB	1670330..1671373 (-)	1044	WP_020915988.1	competence type IV pilus assembly protein ComGB	Machinery gene
FGL05_RS08230 (NCTC8796_01734)	comYA	1671297..1672238 (-)	942	WP_020915987.1	competence type IV pilus ATPase ComGA	Machinery gene
FGL05_RS08235 (NCTC8796_01735)	-	1672310..1672678 (-)	369	WP_020915986.1	DUF1033 family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16159.52 Da
• Isoelectric Point: 9.8332

>NTDB_id=1127698 FGL05_RS08205 WP_043894883.1 1668954..1669391(-) (comYF) [Streptococcus lutetiensis strain NCTC8796]
MSRKIRLRAFTLLESLVALLVISGSILVYQGLTQSISSNVHYLSANQEEKWLLFSQQLRSELAGCQLNKVADNKLYVSKG
NQQLAYGLSKADDFRKTNASGQGYQPMFFGVTSSSISQDGNKVIIKLQLGSDMERCFVYTFKTTS

Nucleotide

• Length: 438 bp

>NTDB_id=1127698 FGL05_RS08205 WP_043894883.1 1668954..1669391(-) (comYF) [Streptococcus lutetiensis strain NCTC8796]
ATGTCACGAAAAATTAGATTAAGAGCTTTTACCCTTTTAGAAAGTTTGGTAGCTTTGCTGGTTATCTCAGGTTCCATATT
GGTTTATCAAGGATTGACCCAAAGCATTTCAAGCAATGTCCATTATTTATCGGCGAATCAAGAGGAAAAATGGTTGCTCT
TTTCTCAGCAGCTGCGTTCTGAGCTTGCTGGTTGTCAGTTGAATAAAGTTGCTGACAACAAACTCTATGTTAGTAAAGGT
AATCAGCAATTGGCTTATGGCTTGTCTAAGGCTGATGATTTTCGAAAAACAAATGCCTCAGGTCAGGGTTATCAACCCAT
GTTCTTTGGCGTGACGTCATCTAGCATCAGTCAGGATGGCAATAAGGTGATAATTAAACTGCAATTAGGCAGTGATATGG
AGAGATGTTTTGTTTACACTTTTAAGACGACAAGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-129)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.696	95.172	0.559
comYF	Streptococcus mutans UA159	57.971	95.172	0.552
comGF/cglF	Streptococcus pneumoniae Rx1	45.652	95.172	0.434
comGF/cglF	Streptococcus pneumoniae D39	45.652	95.172	0.434
comGF/cglF	Streptococcus pneumoniae R6	45.652	95.172	0.434
comGF/cglF	Streptococcus pneumoniae TIGR4	45.652	95.172	0.434
comGF	Lactococcus lactis subsp. cremoris KW2	43.972	97.241	0.428
comGF/cglF	Streptococcus mitis NCTC 12261	43.885	95.862	0.421
comGF/cglF	Streptococcus mitis SK321	43.165	95.862	0.414