Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   FGL05_RS08195 Genome accession   NZ_LR594044
Coordinates   1667622..1668578 (-) Length   318 a.a.
NCBI ID   WP_020915994.1    Uniprot ID   A0AB33AJ02
Organism   Streptococcus lutetiensis strain NCTC8796     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1662622..1673578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL05_RS08160 (NCTC8796_01720) pepA 1662753..1663820 (+) 1068 WP_111712560.1 glutamyl aminopeptidase -
  FGL05_RS08165 (NCTC8796_01721) proC 1663882..1664652 (+) 771 WP_020916000.1 pyrroline-5-carboxylate reductase -
  FGL05_RS08170 (NCTC8796_01722) - 1664689..1665324 (-) 636 WP_111712559.1 type II CAAX endopeptidase family protein -
  FGL05_RS08175 (NCTC8796_01723) - 1665339..1665794 (-) 456 WP_231853254.1 ABC transporter permease -
  FGL05_RS08180 (NCTC8796_01724) - 1665795..1665995 (-) 201 WP_058814360.1 hypothetical protein -
  FGL05_RS08185 (NCTC8796_01725) - 1666012..1666209 (-) 198 WP_020915996.1 helix-turn-helix transcriptional regulator -
  FGL05_RS08190 (NCTC8796_01726) - 1666369..1667568 (-) 1200 WP_020915995.1 acetate kinase -
  FGL05_RS08195 (NCTC8796_01727) comYH 1667622..1668578 (-) 957 WP_020915994.1 class I SAM-dependent methyltransferase Machinery gene
  FGL05_RS08200 (NCTC8796_01728) comGG 1668632..1668982 (-) 351 WP_020915993.1 competence type IV pilus minor pilin ComGG -
  FGL05_RS08205 (NCTC8796_01729) comYF 1668954..1669391 (-) 438 WP_043894883.1 competence type IV pilus minor pilin ComGF Machinery gene
  FGL05_RS08210 (NCTC8796_01730) comYE 1669375..1669668 (-) 294 WP_020915991.1 competence type IV pilus minor pilin ComGE Machinery gene
  FGL05_RS08215 (NCTC8796_01731) comYD 1669622..1670053 (-) 432 WP_020915990.1 competence type IV pilus minor pilin ComGD Machinery gene
  FGL05_RS08220 (NCTC8796_01732) comYC 1670037..1670330 (-) 294 WP_020915989.1 competence type IV pilus major pilin ComGC Machinery gene
  FGL05_RS08225 (NCTC8796_01733) comYB 1670330..1671373 (-) 1044 WP_020915988.1 competence type IV pilus assembly protein ComGB Machinery gene
  FGL05_RS08230 (NCTC8796_01734) comYA 1671297..1672238 (-) 942 WP_020915987.1 competence type IV pilus ATPase ComGA Machinery gene
  FGL05_RS08235 (NCTC8796_01735) - 1672310..1672678 (-) 369 WP_020915986.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35938.07 Da        Isoelectric Point: 4.4591

>NTDB_id=1127697 FGL05_RS08195 WP_020915994.1 1667622..1668578(-) (comYH) [Streptococcus lutetiensis strain NCTC8796]
MNFEKIETAYGLILENIQLIENELKTHIYDALIEQNSFYLGAEGANETVAANNEKLRQLDLTKEEWRRAFQFIFIKAAQT
EALQANHQFTPDAIGFILMFLIENLTASKELDVLEIGSGTGNLAQTLLNNSSKDLNYLGIEVDDLLIDLSASIAEVMDSK
AQFIQEDAVRPQILKESDVIISDLPVGFYPNDEIAKRYKVASSEEHTYAHHLLMEQSLKYLKKDGIAVFLAPVSLLTSKQ
SDLLKAWLKDYADVIAVITLPEPIFGNAANAKSIFVLKKQAEHTPETFVYPLADLQSREVLTDFIEKFKKWNVENMIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1127697 FGL05_RS08195 WP_020915994.1 1667622..1668578(-) (comYH) [Streptococcus lutetiensis strain NCTC8796]
ATGAATTTTGAAAAAATCGAAACAGCTTACGGGCTGATTCTAGAAAATATACAGTTAATCGAAAATGAGTTGAAAACACA
CATTTACGATGCTCTTATTGAACAAAACTCTTTTTATCTTGGTGCTGAAGGTGCCAATGAGACAGTAGCTGCTAATAATG
AAAAACTACGCCAACTTGATTTAACTAAAGAAGAATGGCGTCGTGCTTTTCAGTTTATTTTTATTAAAGCTGCTCAAACA
GAAGCACTTCAGGCAAATCACCAATTTACACCTGATGCAATTGGCTTTATCTTAATGTTCCTTATTGAGAATTTGACAGC
TTCAAAAGAACTTGATGTTTTAGAAATTGGTAGCGGAACAGGTAACCTTGCACAAACCTTGCTCAATAATTCATCTAAAG
ACTTGAATTACCTTGGAATTGAAGTTGATGATTTGTTGATTGACTTGTCAGCAAGTATTGCCGAAGTGATGGATTCTAAA
GCTCAGTTCATTCAAGAAGATGCTGTGCGCCCACAGATTCTTAAAGAAAGTGACGTCATCATCAGTGACCTTCCAGTCGG
CTTCTATCCCAATGATGAAATTGCAAAACGCTACAAAGTAGCAAGCAGTGAAGAACACACTTATGCGCATCATTTGTTGA
TGGAACAATCTCTCAAATATCTCAAAAAAGATGGTATTGCTGTCTTTTTAGCACCGGTTAGTCTTTTGACAAGTAAACAA
AGTGATTTGTTAAAGGCATGGTTGAAGGATTACGCTGATGTTATTGCGGTGATTACTTTACCAGAACCTATTTTCGGCAA
TGCGGCCAATGCTAAGTCAATTTTTGTCTTGAAGAAACAGGCTGAACATACTCCAGAAACATTTGTTTACCCGCTTGCTG
ACTTGCAAAGTCGCGAAGTTTTAACAGATTTTATTGAGAAATTTAAAAAATGGAATGTTGAAAATATGATTTTTTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

68.354

99.371

0.679
  comYH Streptococcus mutans UA159

68.038

99.371

0.676

Multiple sequence alignment