Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACAty_RS07460 Genome accession   NZ_CP005986
Coordinates   1543644..1545164 (+) Length   506 a.a.
NCBI ID   WP_004872379.1    Uniprot ID   A0A059ZZD1
Organism   Acidithiobacillus caldus ATCC 51756     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1538644..1550164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAty_RS07430 (Acaty_c1505) - 1538836..1539228 (-) 393 WP_004872370.1 SCP2 sterol-binding domain-containing protein -
  ACAty_RS07435 (Acaty_c1506) - 1539298..1540047 (-) 750 WP_014003026.1 ThiF family adenylyltransferase -
  ACAty_RS07440 (Acaty_c1507) - 1540052..1540834 (-) 783 WP_004872372.1 TatD family hydrolase -
  ACAty_RS07445 (Acaty_c1508) - 1540915..1542180 (+) 1266 WP_038472750.1 FAD-dependent monooxygenase -
  ACAty_RS07450 (Acaty_c1509) - 1542167..1543354 (+) 1188 WP_004872376.1 FAD-dependent monooxygenase -
  ACAty_RS07455 (Acaty_c1510) - 1543365..1543640 (+) 276 WP_004872378.1 accessory factor UbiK family protein -
  ACAty_RS07460 (Acaty_c1511) comM 1543644..1545164 (+) 1521 WP_004872379.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ACAty_RS07465 (Acaty_c1512) - 1545180..1545833 (+) 654 WP_004872380.1 YidH family protein -
  ACAty_RS07470 (Acaty_c1513) pssA 1545845..1546594 (-) 750 WP_004872381.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  ACAty_RS07475 (Acaty_c1514) - 1546591..1547253 (-) 663 WP_004872382.1 phosphatidylserine decarboxylase -
  ACAty_RS07480 (Acaty_c1515) ilvC 1547371..1548387 (-) 1017 WP_004872383.1 ketol-acid reductoisomerase -
  ACAty_RS07485 (Acaty_c1516) ilvN 1548430..1548924 (-) 495 WP_004872384.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53974.02 Da        Isoelectric Point: 8.0071

>NTDB_id=112748 ACAty_RS07460 WP_004872379.1 1543644..1545164(+) (comM) [Acidithiobacillus caldus ATCC 51756]
MPLAIVQSRAVAGIQGAEVVVECDLGPGLPTFAVVGLAETAVKEARDRVRSAIQNSGLDFPARRIVVNLAPADLPKEGGR
FDLPIALGILAASGQIPMAALTAMECIGELALDGGLRPVPGALSAALAASGAGRELLLPRANADEAVLAEGAVIRAAATL
AQAVAHLRGQRHLPAWEASHGPAGEPEALAETLPDIADVRGQEMVKRALVVAALGGHHLLLSGPPGTGKSMLAMRLPGLL
PPLQRDEAMEVAALHSLHGSFESRHWRRRPFRSPHHSASVAALVGGGSRPKPGEISLAHGGVLFLDELPEFPRAVLEALR
EPLETGEIHISRANRHTSYPARFQLVAAMNPCPCGHLGNPREACRCTPAQIQQYRGRLSGPLLDRIDIQVEVPALPIEAL
QQKESGPDSAYWRERIGAARERQMLRQGCLNGQLQGKALDRQVTLAPADRSFLERAAQSLAFSARAYHRVLRVARSIADL
EARDSIHREDLAEAIQYRRLALSLGH

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=112748 ACAty_RS07460 WP_004872379.1 1543644..1545164(+) (comM) [Acidithiobacillus caldus ATCC 51756]
GTGCCCCTGGCAATCGTTCAGAGTCGTGCGGTTGCCGGCATTCAGGGCGCCGAAGTGGTGGTGGAGTGTGATCTCGGACC
GGGTCTGCCCACCTTTGCCGTCGTGGGGCTTGCCGAAACGGCGGTGAAAGAGGCCCGCGACCGGGTGCGCTCGGCCATCC
AGAACAGTGGCCTCGATTTTCCGGCGCGGCGCATCGTCGTCAACCTCGCCCCGGCGGACCTACCCAAGGAAGGGGGTCGC
TTCGATCTACCCATCGCCCTAGGCATCCTCGCTGCCAGCGGTCAGATCCCCATGGCCGCCCTCACGGCCATGGAGTGCAT
CGGTGAATTGGCTCTGGACGGTGGTCTGCGCCCGGTGCCCGGTGCCCTGAGTGCTGCCCTGGCGGCCAGTGGTGCGGGCC
GGGAATTGCTCTTGCCTCGGGCCAATGCCGATGAAGCCGTTCTGGCCGAGGGTGCGGTCATCCGCGCTGCGGCCACCTTG
GCACAGGCCGTAGCCCATCTACGAGGACAGCGGCATCTGCCAGCATGGGAAGCCAGCCATGGCCCGGCGGGGGAACCCGA
AGCACTTGCCGAGACCTTGCCGGATATTGCCGATGTGCGGGGCCAGGAGATGGTCAAGCGGGCGCTGGTGGTCGCTGCCC
TGGGTGGTCATCACTTGCTTTTGTCGGGTCCTCCGGGTACCGGCAAGAGTATGCTGGCCATGCGCTTACCGGGCCTCTTG
CCACCCCTGCAACGGGACGAGGCCATGGAGGTCGCTGCCCTACACAGTCTGCACGGCAGCTTCGAGAGTCGCCACTGGCG
ACGCCGGCCCTTTCGCAGTCCACACCACAGTGCCTCCGTTGCGGCGCTGGTGGGCGGCGGATCGCGTCCCAAACCCGGCG
AGATCAGCCTCGCCCACGGCGGTGTACTTTTTCTGGACGAACTGCCAGAATTTCCGCGGGCCGTCCTCGAGGCCCTGCGG
GAGCCTCTGGAAACGGGTGAGATTCACATTTCCCGGGCCAATCGGCATACCTCCTACCCGGCCCGCTTTCAGTTGGTGGC
GGCCATGAATCCCTGCCCTTGCGGTCATCTGGGCAACCCGCGGGAGGCCTGCCGCTGCACACCCGCCCAGATTCAGCAGT
ACCGCGGCCGGCTCTCGGGGCCGCTTTTGGATCGTATCGACATTCAGGTTGAGGTACCCGCTTTGCCCATCGAAGCACTC
CAGCAGAAGGAATCGGGCCCGGATTCGGCGTATTGGCGCGAGCGCATCGGTGCTGCTCGTGAGCGGCAGATGCTGCGTCA
GGGCTGCCTCAACGGACAGCTCCAGGGCAAGGCCCTGGATCGGCAGGTGACTCTGGCACCGGCAGATCGCAGTTTTCTGG
AGCGTGCCGCGCAGAGCCTTGCATTCTCGGCACGCGCCTACCATCGGGTGCTGCGGGTGGCACGCAGCATTGCCGACCTG
GAGGCAAGGGACTCGATACACCGGGAAGACCTGGCCGAAGCCATCCAGTACCGCCGCCTGGCTCTGAGCCTTGGGCACTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(408-498)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(195-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A059ZZD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53

98.814

0.524
  comM Vibrio campbellii strain DS40M4

52.894

99.012

0.524
  comM Haemophilus influenzae Rd KW20

52.8

98.814

0.522
  comM Glaesserella parasuis strain SC1401

52.295

99.012

0.518
  comM Legionella pneumophila str. Paris

48.907

99.407

0.486
  comM Legionella pneumophila strain ERS1305867

48.907

99.407

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.801

100

0.429

Multiple sequence alignment