Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   FGL04_RS07740 Genome accession   NZ_LR594035
Coordinates   1495556..1497055 (-) Length   499 a.a.
NCBI ID   WP_138068781.1    Uniprot ID   A0A4U9Z1I3
Organism   Streptococcus pseudoporcinus strain NCTC5385     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1490556..1502055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL04_RS07705 (NCTC5385_01677) - 1491117..1491323 (-) 207 Protein_1510 ParA family protein -
  FGL04_RS07710 (NCTC5385_01678) - 1491420..1491602 (-) 183 WP_138068777.1 hypothetical protein -
  FGL04_RS07715 (NCTC5385_01679) - 1491681..1492175 (-) 495 WP_138068778.1 modification methylase Sau96I -
  FGL04_RS07720 (NCTC5385_01680) - 1492222..1492410 (-) 189 WP_000677078.1 hypothetical protein -
  FGL04_RS07725 (NCTC5385_01681) amiF 1492635..1493558 (-) 924 WP_138068779.1 ATP-binding cassette domain-containing protein Regulator
  FGL04_RS07730 (NCTC5385_01682) amiE 1493551..1494621 (-) 1071 WP_138068780.1 ABC transporter ATP-binding protein Regulator
  FGL04_RS07735 (NCTC5385_01683) amiD 1494630..1495556 (-) 927 WP_007893576.1 oligopeptide ABC transporter permease OppC Regulator
  FGL04_RS07740 (NCTC5385_01684) amiC 1495556..1497055 (-) 1500 WP_138068781.1 ABC transporter permease Regulator
  FGL04_RS07745 (NCTC5385_01685) amiA3 1497125..1499107 (-) 1983 WP_138068782.1 peptide ABC transporter substrate-binding protein Regulator
  FGL04_RS07750 (NCTC5385_01686) pbp3 1499432..1500670 (+) 1239 WP_138068783.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  FGL04_RS07755 (NCTC5385_01687) pbp3 1500717..1501931 (+) 1215 WP_138068784.1 D-alanyl-D-alanine carboxypeptidase PBP3 -

Sequence

Protein


Download         Length: 499 a.a.        Molecular weight: 56023.67 Da        Isoelectric Point: 10.0722

>NTDB_id=1127309 FGL04_RS07740 WP_138068781.1 1495556..1497055(-) (amiC) [Streptococcus pseudoporcinus strain NCTC5385]
MKKYIIERILRSLISILLVTTLTYIIVFTLVPTNLIFKQDPNYNKMVTTPDKKENYRNTIFERMGYISYYNSKELEAKAE
KIDKSVSVEPSKANQKIYQAYINSIGNGWKLKRFEESKKFYAVRNIPIYERVWNFFSHLIVIDHPWVIKDKSNPNLAHYI
RPEIDPAVGPALVGSGTKHKYMLYFNKQFPFVHQNFIGFNLGISYPTYANIPVIQVITQEQGRTLSKEVTFPNGTKKFSP
INIYSRTYKSPSKADVRDRMNFGKDDPYTATENNHAEPSMISNSFIIGMIGVLLSYIFGLPIGMLMAYYKDGIFDRFSTG
ATTFMLALPSIALIYIVRFIGSMVGLPDTFPLLGASDPKSYVLPALILGILGTPGNVVWFRRYLVDLQGSDFVRFARAKG
LTEAEISKNHLFKQAMVPIVNGIPQAVVATIAGATLTETVFAFPGMGKMLIDAIKVANNAMVVGLVFIFAVLSILALLAG
DILMTILDPRIKLSSKGGK

Nucleotide


Download         Length: 1500 bp        

>NTDB_id=1127309 FGL04_RS07740 WP_138068781.1 1495556..1497055(-) (amiC) [Streptococcus pseudoporcinus strain NCTC5385]
ATGAAAAAGTATATTATTGAGCGCATCTTGAGGTCCTTAATATCAATTTTGTTGGTAACTACACTGACTTATATCATCGT
TTTTACACTTGTTCCAACAAATTTGATTTTTAAACAAGATCCTAATTATAACAAGATGGTGACGACACCAGATAAAAAAG
AAAATTATCGAAATACGATTTTCGAGCGTATGGGCTATATTTCTTACTACAATAGTAAAGAATTAGAAGCTAAGGCTGAG
AAAATAGATAAATCTGTTAGCGTTGAACCATCAAAGGCTAATCAAAAAATTTATCAGGCCTATATCAATTCCATCGGAAA
TGGTTGGAAATTGAAACGTTTTGAAGAAAGTAAAAAATTCTATGCAGTCCGTAACATACCAATTTATGAGCGAGTGTGGA
ATTTTTTCAGTCACTTGATAGTAATTGATCACCCGTGGGTAATTAAAGATAAATCAAATCCGAACCTAGCTCACTATATT
CGCCCAGAAATAGATCCAGCAGTAGGCCCAGCTTTGGTTGGTTCAGGGACTAAACATAAGTATATGTTATACTTCAATAA
ACAATTTCCCTTTGTTCACCAAAACTTTATTGGCTTTAATTTGGGGATTTCCTATCCAACTTACGCTAATATTCCTGTTA
TTCAAGTTATTACACAAGAACAAGGGCGCACGTTATCTAAAGAAGTAACCTTCCCAAATGGGACTAAGAAGTTTTCACCA
ATTAATATCTACTCTCGCACTTACAAGTCACCTAGTAAGGCAGATGTCAGGGATCGAATGAACTTTGGAAAAGATGACCC
ATACACTGCAACTGAAAATAACCATGCAGAGCCATCTATGATAAGTAATTCATTCATTATTGGTATGATTGGTGTTTTAC
TATCGTATATCTTTGGCCTTCCGATTGGTATGTTGATGGCTTATTATAAAGACGGCATATTTGATCGTTTCTCTACTGGT
GCCACAACATTTATGTTAGCTCTTCCAAGCATTGCCTTGATATATATTGTTCGTTTCATAGGCTCAATGGTTGGCCTTCC
TGATACGTTTCCATTGTTAGGTGCAAGCGATCCTAAGTCTTACGTCTTACCAGCTCTAATTTTGGGAATTCTAGGAACAC
CAGGAAATGTCGTCTGGTTCCGTCGCTACTTGGTAGACTTACAAGGTAGTGATTTTGTTCGATTTGCGCGTGCTAAAGGA
TTAACGGAAGCTGAAATATCAAAAAATCACTTATTTAAACAAGCTATGGTTCCCATTGTCAATGGAATTCCACAGGCAGT
AGTTGCAACTATCGCAGGAGCTACCTTAACTGAAACTGTTTTTGCTTTTCCAGGAATGGGGAAAATGCTGATTGATGCTA
TTAAAGTAGCTAATAATGCAATGGTTGTTGGCCTTGTCTTTATCTTCGCAGTTCTTTCCATTTTAGCATTGCTAGCTGGT
GACATCCTAATGACCATACTTGATCCACGTATCAAATTATCTAGTAAAGGAGGAAAGTAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(299-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U9Z1I3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

62.325

100

0.623
  amiC Streptococcus thermophilus LMG 18311

62.124

100

0.621
  amiC Streptococcus thermophilus LMD-9

61.723

100

0.617

Multiple sequence alignment