Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   FGL04_RS07730 Genome accession   NZ_LR594035
Coordinates   1493551..1494621 (-) Length   356 a.a.
NCBI ID   WP_138068780.1    Uniprot ID   A0A4U9Z4H3
Organism   Streptococcus pseudoporcinus strain NCTC5385     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1488551..1499621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL04_RS07695 (NCTC5385_01674) hpf 1489246..1489794 (-) 549 WP_007891529.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FGL04_RS07700 (NCTC5385_01676) - 1489948..1491081 (+) 1134 Protein_1509 IS3 family transposase -
  FGL04_RS07705 (NCTC5385_01677) - 1491117..1491323 (-) 207 Protein_1510 ParA family protein -
  FGL04_RS07710 (NCTC5385_01678) - 1491420..1491602 (-) 183 WP_138068777.1 hypothetical protein -
  FGL04_RS07715 (NCTC5385_01679) - 1491681..1492175 (-) 495 WP_138068778.1 modification methylase Sau96I -
  FGL04_RS07720 (NCTC5385_01680) - 1492222..1492410 (-) 189 WP_000677078.1 hypothetical protein -
  FGL04_RS07725 (NCTC5385_01681) amiF 1492635..1493558 (-) 924 WP_138068779.1 ATP-binding cassette domain-containing protein Regulator
  FGL04_RS07730 (NCTC5385_01682) amiE 1493551..1494621 (-) 1071 WP_138068780.1 ABC transporter ATP-binding protein Regulator
  FGL04_RS07735 (NCTC5385_01683) amiD 1494630..1495556 (-) 927 WP_007893576.1 oligopeptide ABC transporter permease OppC Regulator
  FGL04_RS07740 (NCTC5385_01684) amiC 1495556..1497055 (-) 1500 WP_138068781.1 ABC transporter permease Regulator
  FGL04_RS07745 (NCTC5385_01685) amiA3 1497125..1499107 (-) 1983 WP_138068782.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40042.04 Da        Isoelectric Point: 6.5077

>NTDB_id=1127307 FGL04_RS07730 WP_138068780.1 1493551..1494621(-) (amiE) [Streptococcus pseudoporcinus strain NCTC5385]
MEENKEIILSAKNVVVEFDVRDRTLTAIRDISIDLYEGDVLAVVGESGSGKSVLTKTFTGMLESNGRVASGSIDYRGQEL
TKLKNHKDWEGIRGAKIATIFQDPMTSLGPIQTIGSQITEVIIKHQKKSHSEAKKMAIDYMTKVGIPNPDKRFREYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIELLKSLQKEYQFTIIFITHDLGVVASIATNVAVMYAGEIIE
YGRVEDIFYDPRHPYTWSLLSSLPQLADDKGVLFSIPGTPPSLYKPIVGDAFAPRSRYAMKIDFEESSPRFNVSETHWAK
TWLLHPDAPKVQKPEVIQDIHEKILKKQIYREEGNV

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=1127307 FGL04_RS07730 WP_138068780.1 1493551..1494621(-) (amiE) [Streptococcus pseudoporcinus strain NCTC5385]
ATGGAAGAAAATAAAGAAATAATATTAAGTGCAAAAAATGTCGTTGTTGAATTTGATGTTCGTGATCGCACCTTAACTGC
TATTCGTGATATTTCAATTGATCTGTATGAAGGCGATGTCCTAGCGGTTGTTGGGGAATCTGGAAGTGGAAAGTCAGTTT
TGACAAAAACATTTACGGGAATGTTAGAATCTAATGGTAGAGTGGCCTCTGGAAGTATTGATTACCGTGGGCAAGAGCTA
ACGAAACTCAAAAATCATAAAGACTGGGAAGGTATCCGCGGAGCAAAAATAGCGACAATTTTCCAAGATCCTATGACAAG
CCTTGGCCCGATTCAAACAATCGGAAGCCAAATCACTGAAGTGATTATCAAACATCAGAAGAAATCTCATTCTGAAGCTA
AAAAAATGGCTATTGATTATATGACTAAGGTTGGTATTCCTAATCCTGATAAACGTTTTAGAGAGTACCCATTTCAATAT
TCTGGAGGTATGAGGCAACGGATTGTTATAGCAATTGCGTTAGCCTGTCGCCCAGATATTCTGATTTGTGATGAGCCAAC
TACAGCTTTAGATGTTACTATTCAAGCTCAGATTATTGAATTGTTAAAGTCACTTCAAAAGGAATATCAATTTACCATTA
TTTTTATTACTCACGATCTTGGTGTCGTTGCAAGTATAGCGACTAATGTGGCGGTCATGTATGCAGGAGAAATCATTGAG
TATGGAAGGGTAGAAGATATCTTCTATGACCCAAGGCACCCTTATACATGGAGTCTCCTATCAAGCTTGCCACAATTAGC
TGATGATAAAGGTGTTTTATTCTCTATTCCAGGGACACCACCGTCACTGTACAAGCCGATTGTTGGCGACGCTTTTGCGC
CTCGTTCACGCTATGCCATGAAAATTGATTTTGAAGAAAGCTCTCCGCGTTTTAACGTGAGTGAAACGCATTGGGCCAAA
ACATGGTTACTCCACCCGGATGCACCAAAGGTTCAAAAACCTGAGGTCATTCAAGACATTCATGAAAAAATTTTAAAGAA
GCAAATCTATCGGGAGGAAGGAAATGTCTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U9Z4H3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

79.722

100

0.806
  amiE Streptococcus thermophilus LMG 18311

78.611

100

0.795
  amiE Streptococcus thermophilus LMD-9

78.611

100

0.795
  oppD Streptococcus mutans UA159

55.882

95.506

0.534

Multiple sequence alignment