Detailed information NTG1127306

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: FGL04_RS07725
• Genome accession: NZ_LR594035
• Coordinates: 1492635..1493558 (-)
• Length: 307 a.a.
• NCBI ID: WP_138068779.1
• Uniprot ID: A0A4U9Z0P6
• Organism: Streptococcus pseudoporcinus strain NCTC5385
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1487635..1498558

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FGL04_RS07695 (NCTC5385_01674)	hpf	1489246..1489794 (-)	549	WP_007891529.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
FGL04_RS07700 (NCTC5385_01676)	-	1489948..1491081 (+)	1134	Protein_1509	IS3 family transposase	-
FGL04_RS07705 (NCTC5385_01677)	-	1491117..1491323 (-)	207	Protein_1510	ParA family protein	-
FGL04_RS07710 (NCTC5385_01678)	-	1491420..1491602 (-)	183	WP_138068777.1	hypothetical protein	-
FGL04_RS07715 (NCTC5385_01679)	-	1491681..1492175 (-)	495	WP_138068778.1	modification methylase Sau96I	-
FGL04_RS07720 (NCTC5385_01680)	-	1492222..1492410 (-)	189	WP_000677078.1	hypothetical protein	-
FGL04_RS07725 (NCTC5385_01681)	amiF	1492635..1493558 (-)	924	WP_138068779.1	ATP-binding cassette domain-containing protein	Regulator
FGL04_RS07730 (NCTC5385_01682)	amiE	1493551..1494621 (-)	1071	WP_138068780.1	ABC transporter ATP-binding protein	Regulator
FGL04_RS07735 (NCTC5385_01683)	amiD	1494630..1495556 (-)	927	WP_007893576.1	oligopeptide ABC transporter permease OppC	Regulator
FGL04_RS07740 (NCTC5385_01684)	amiC	1495556..1497055 (-)	1500	WP_138068781.1	ABC transporter permease	Regulator

Sequence

Protein

• Length: 307 a.a.
• Molecular weight: 34581.03 Da
• Isoelectric Point: 7.5577

>NTDB_id=1127306 FGL04_RS07725 WP_138068779.1 1492635..1493558(-) (amiF) [Streptococcus pseudoporcinus strain NCTC5385]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNETSKGDILYDGKIINGKKSKS
EVNALIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEEERQEKIKNMMSEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMDPEFVIADEPISALDVSVRAQVLNLLKKMQKEKGLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFI
NPIHPYTKSLLSALPIPDPILERKKKLIVYSADQHDYSVDKPKMVEIKPGHFVWANKAEVAEYQKEL

Nucleotide

• Length: 924 bp

>NTDB_id=1127306 FGL04_RS07725 WP_138068779.1 1492635..1493558(-) (amiF) [Streptococcus pseudoporcinus strain NCTC5385]
ATGTCTGAGAAATTAGTTGAAGTCAAAGACTTAGAAATTTCCTTCGGTGAAGGAAAGAAAAAATTTGTAGCCGTCAAAAA
TGCTAACTTCTTTATTAACAAAGGAGAGACTTTTTCACTTGTTGGAGAATCAGGATCTGGTAAAACCACAATTGGGCGTG
CTATCATTGGTTTGAATGAGACAAGCAAAGGGGATATTCTTTATGACGGAAAAATCATAAATGGAAAAAAATCAAAATCT
GAAGTCAACGCATTAATTCGTAAGATTCAGATGATTTTCCAAGACCCAGCTGCTAGTTTAAATGAGCGAGCAACAGTTGA
TTATATCATTTCAGAAGGTCTTTATAACTTTAATCTCTTTAAAACTGAAGAGGAACGACAAGAAAAGATAAAAAATATGA
TGTCAGAAGTCGGTCTGTTATCGGAACATCTGACGCGGTATCCTCATGAATTTTCTGGTGGGCAACGCCAGCGTATTGGG
ATCGCACGTGCCTTAGTTATGGACCCTGAGTTTGTCATTGCAGATGAACCTATATCGGCTCTTGATGTCTCTGTTCGGGC
TCAAGTCTTAAACCTTTTGAAAAAGATGCAAAAAGAAAAAGGACTAACCTATCTCTTTATTGCTCATGACTTATCCGTTG
TACGTTTTATATCTGACCGAATAGCAGTTATTCATAAAGGGGTCATTGTGGAAGTTGCTGAAACAGAAGAACTCTTCATT
AATCCGATTCACCCTTATACCAAGTCTCTTTTATCAGCGTTACCAATTCCTGATCCGATATTGGAGAGAAAGAAAAAATT
AATTGTCTACTCAGCTGACCAGCACGACTATTCAGTTGACAAACCTAAGATGGTTGAAATAAAACCAGGGCATTTTGTAT
GGGCTAATAAAGCTGAAGTTGCTGAATATCAAAAAGAACTATAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (25-178)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (230-262)

3D structure

• AlphaFold DB: A0A4U9Z0P6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMG 18311	83.007	99.674	0.827
amiF	Streptococcus thermophilus LMD-9	82.68	99.674	0.824
amiF	Streptococcus salivarius strain HSISS4	82.68	99.674	0.824