Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   LG36_RS06170 Genome accession   NZ_CP009472
Coordinates   1278573..1279643 (+) Length   356 a.a.
NCBI ID   WP_038600916.1    Uniprot ID   -
Organism   Lactococcus lactis strain AI06     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1273573..1284643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG36_RS06155 (LG36_1164) - 1274340..1275269 (+) 930 WP_038600907.1 N(5)-(carboxyethyl)ornithine synthase -
  LG36_RS06160 (LG36_1165) - 1275968..1277131 (-) 1164 WP_038600910.1 MFS transporter -
  LG36_RS06165 (LG36_1166) - 1277348..1278181 (+) 834 WP_038600913.1 Rgg/GadR/MutR family transcriptional regulator -
  LG36_RS06170 (LG36_1167) xerS 1278573..1279643 (+) 1071 WP_038600916.1 tyrosine recombinase XerS Machinery gene
  LG36_RS06175 (LG36_1168) trmFO 1279688..1281031 (-) 1344 WP_038600918.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  LG36_RS06180 (LG36_1169) topA 1281103..1283235 (-) 2133 WP_038600921.1 type I DNA topoisomerase -
  LG36_RS06185 (LG36_1170) dprA 1283497..1284345 (-) 849 WP_038600928.1 DNA-processing protein DprA Machinery gene

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41381.21 Da        Isoelectric Point: 9.6756

>NTDB_id=112724 LG36_RS06170 WP_038600916.1 1278573..1279643(+) (xerS) [Lactococcus lactis strain AI06]
MKREQLIQNIEKLKHIMPSYVLEYYQSKLTIPYSLNTLYEYLKEYERFFSWLVDSGVADVDKITDVSLSVLENLTKRDLE
SFILYLRERPRLNTRSTRYGVSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGK
LFLGDETQGFLDYIDNEYEKTLSNRARSSFFKNKERDLAIIALILASGIRLSEAVNVDLRDLNLITMVVEVTRKGGKRDA
VPFAPFAKTYFERYLEVRSQRYKTTAKDTAFFVTLYRDVPSRIDPSSVEKLVAKYSQAFKVRVTPHKLRHTLATRLYAQT
NSQVLVSNQLGHASTQVTDLYTHIINEEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=112724 LG36_RS06170 WP_038600916.1 1278573..1279643(+) (xerS) [Lactococcus lactis strain AI06]
ATGAAACGTGAACAATTAATACAAAATATTGAAAAACTAAAACATATCATGCCTTCTTATGTTTTAGAATATTATCAATC
TAAACTTACTATCCCTTATAGTTTGAATACACTTTATGAATATCTTAAAGAATATGAACGTTTCTTTAGTTGGTTGGTCG
ATTCTGGAGTTGCTGATGTTGATAAGATTACGGATGTTTCCCTCTCTGTCTTAGAAAACTTAACTAAACGAGATTTGGAG
TCTTTTATCCTCTATCTTAGGGAGAGACCCCGTTTAAATACGCGCTCTACTCGTTATGGGGTTAGTCAAACAACAATTAA
TCGTACTCTTTCTGCTCTTTCTAGTCTTTATAAATACCTTACTGAAGAGGTTGAAAATGAAGATGGTGAGCCTTACTTCT
ATCGTAATGTTATGAAGAAAGTACAGACTAAAAAAAAATCCGAAACTTTAGCTTCTCGTGCGGAGAATATTAAAGGGAAA
CTTTTTTTGGGAGATGAAACTCAAGGTTTTCTTGACTATATTGACAATGAGTACGAAAAAACATTATCAAATAGAGCTCG
TTCTAGTTTTTTCAAAAATAAAGAACGTGATTTAGCAATTATCGCACTTATTTTAGCCTCTGGTATTCGTCTTTCTGAGG
CAGTTAATGTAGATTTAAGAGATTTAAATCTTATTACTATGGTTGTTGAGGTAACTCGGAAAGGAGGAAAAAGGGATGCT
GTTCCTTTTGCTCCTTTTGCCAAAACTTATTTTGAAAGATACTTGGAAGTACGAAGTCAACGTTATAAGACTACAGCGAA
AGATACGGCATTTTTTGTGACACTTTATAGAGATGTTCCTAGTCGAATAGATCCTTCTAGTGTTGAAAAATTAGTTGCTA
AATATTCTCAAGCTTTTAAAGTACGAGTGACCCCTCACAAACTTAGACATACACTTGCGACTCGACTTTATGCTCAAACA
AATTCTCAGGTATTGGTGAGTAATCAGTTAGGGCACGCTTCAACTCAAGTTACAGACCTTTATACTCATATTATCAATGA
AGAGCAAAAAAATGCTTTGGATAATCTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(182-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

76.685

100

0.767

Multiple sequence alignment