Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   PFLUOLIPICF7_RS09105 Genome accession   NZ_CP005975
Coordinates   2016482..2017978 (-) Length   498 a.a.
NCBI ID   WP_042570933.1    Uniprot ID   -
Organism   Pseudomonas simiae strain PICF7     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2011482..2022978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFLUOLIPICF7_RS09085 (PFLUOLIPICF7_09130) - 2011797..2012717 (+) 921 WP_010207468.1 LysR substrate-binding domain-containing protein -
  PFLUOLIPICF7_RS09090 (PFLUOLIPICF7_09135) - 2012895..2014871 (+) 1977 WP_010207466.1 methyl-accepting chemotaxis protein -
  PFLUOLIPICF7_RS09095 - 2014875..2015789 (-) 915 WP_176331943.1 ABC transporter six-transmembrane domain-containing protein -
  PFLUOLIPICF7_RS09100 - 2015901..2016485 (+) 585 WP_044288170.1 TetR/AcrR family transcriptional regulator -
  PFLUOLIPICF7_RS09105 (PFLUOLIPICF7_09150) comM 2016482..2017978 (-) 1497 WP_042570933.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  PFLUOLIPICF7_RS09110 (PFLUOLIPICF7_09155) - 2018073..2019344 (-) 1272 WP_021492607.1 MFS transporter -
  PFLUOLIPICF7_RS09115 (PFLUOLIPICF7_09160) - 2019371..2019631 (-) 261 WP_010207460.1 accessory factor UbiK family protein -
  PFLUOLIPICF7_RS09120 (PFLUOLIPICF7_09165) glnK 2020054..2020392 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  PFLUOLIPICF7_RS09125 (PFLUOLIPICF7_09170) - 2020427..2021764 (+) 1338 WP_010207459.1 ammonium transporter -
  PFLUOLIPICF7_RS09130 (PFLUOLIPICF7_09175) - 2021976..2022401 (+) 426 WP_010207458.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  PFLUOLIPICF7_RS09135 (PFLUOLIPICF7_09180) sutA 2022505..2022831 (+) 327 WP_010207457.1 transcriptional regulator SutA -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53417.60 Da        Isoelectric Point: 8.2079

>NTDB_id=112724 PFLUOLIPICF7_RS09105 WP_042570933.1 2016482..2017978(-) (comM) [Pseudomonas simiae strain PICF7]
MSLAIVHSRAQIGVEAPAVTVEVHMANGLPSLTLVGLPETAVKESKDRVRSAILNSALQYPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPASMLDEVECLGELALSGEVRAVKGVLPAALAARKAGRTVIVPRANAEEACLASGLKVLAVDHL
LQVVAHLNGHQPIEPYKSDGLLYLNKPYPDLSEVQGQLAAKRALLIAAAGAHNLLLSGPPGTGKTLLASRLPGLLPPLSE
QEALEVAAIQSVVSVAPLSHWPHRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRARDRVSFPARFQLVAAMNPCPCGYLGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVARETTALNPTQQA
GDNTAEASARVAQARDRQQQRQGCANAFLDLPELRKHCKLAKVDECWLENACERLTLSLRAAHRLLKVARTLADLEHTDS
INRAHLAEALQYRPAAVG

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=112724 PFLUOLIPICF7_RS09105 WP_042570933.1 2016482..2017978(-) (comM) [Pseudomonas simiae strain PICF7]
ATGTCCCTCGCCATCGTCCACAGCCGTGCCCAAATTGGCGTCGAAGCTCCCGCCGTCACCGTCGAGGTGCACATGGCCAA
TGGTCTGCCGTCCCTGACACTGGTGGGTTTGCCGGAAACGGCGGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATTC
TCAATTCTGCCCTGCAATACCCGGCCCGCCGCATCACCCTGAACCTGGCACCTGCCGACCTGCCCAAGGACGGCGGGCGT
TTTGACCTGGCGATTGCCTTGGGAATCCTCGCGGCCAGCGTGCAGGTGCCGGCGTCGATGCTCGATGAGGTGGAATGCCT
GGGAGAATTGGCCCTGTCCGGCGAAGTGCGGGCAGTGAAAGGCGTGTTGCCGGCAGCATTGGCGGCGCGCAAGGCGGGGC
GCACCGTAATCGTGCCGCGGGCGAATGCGGAAGAAGCCTGCCTGGCGTCGGGGTTGAAAGTGCTCGCCGTGGATCATTTG
CTGCAGGTGGTAGCGCACCTGAATGGGCATCAGCCCATCGAGCCCTACAAATCCGACGGATTGCTGTATCTGAACAAACC
TTACCCGGACCTGAGCGAAGTACAGGGCCAGCTCGCCGCCAAGCGCGCACTGCTGATCGCGGCGGCGGGGGCGCATAACC
TGCTGTTAAGCGGCCCGCCCGGCACCGGCAAGACATTGCTCGCCAGTCGCCTACCGGGTTTGTTGCCACCGCTGAGTGAG
CAGGAAGCCCTGGAAGTGGCGGCGATTCAATCGGTCGTCAGCGTGGCGCCACTCAGTCATTGGCCCCACCGACCGTTTCG
CCAGCCGCATCATTCGGCGTCGGGCCCGGCGCTGGTGGGAGGCGGGTCAAAGCCGCAACCGGGAGAAATCACCCTGGCCC
ATCACGGCGTGCTGTTTCTGGATGAGCTGCCGGAGTTCGACCGCAAAGTATTGGAGGTGCTGCGCGAGCCACTGGAATCA
GGGCACATCGTGATTTCCCGTGCCCGCGACCGCGTGAGCTTCCCGGCCCGTTTCCAACTGGTCGCCGCCATGAACCCCTG
CCCTTGCGGGTACCTCGGCGAACCCAGCGGACGTTGTCGCTGTACGCCGGAGCAGATCCAGCGCTATCGCAACAAGCTCT
CCGGGCCGCTGCTGGACCGCATCGACTTGCACCTCACTGTGGCGCGAGAAACCACTGCGTTGAATCCTACCCAGCAGGCA
GGCGATAACACAGCCGAGGCGTCGGCACGGGTCGCCCAGGCCCGCGATCGCCAACAGCAACGCCAAGGCTGTGCGAATGC
TTTCCTTGATCTGCCGGAGCTACGCAAGCACTGCAAGCTGGCGAAGGTCGACGAATGCTGGCTGGAAAACGCCTGTGAAC
GGCTGACGCTTTCCCTGCGCGCAGCCCATCGACTGCTCAAAGTGGCACGCACCCTAGCCGACCTTGAGCACACCGATAGC
ATCAACCGGGCGCATCTGGCGGAAGCGTTGCAGTATCGGCCCGCGGCTGTTGGCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.97

99.398

0.566
  comM Glaesserella parasuis strain SC1401

56.287

100

0.566
  comM Vibrio cholerae strain A1552

56.162

99.398

0.558
  comM Haemophilus influenzae Rd KW20

55.2

100

0.554
  comM Legionella pneumophila str. Paris

50.806

99.598

0.506
  comM Legionella pneumophila strain ERS1305867

50.806

99.598

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.918

100

0.474

Multiple sequence alignment