Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   FGK99_RS08530 Genome accession   NZ_LR594033
Coordinates   1786216..1788192 (-) Length   658 a.a.
NCBI ID   WP_138119770.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC4675     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1781216..1793192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK99_RS08510 (NCTC4675_01725) amiF 1781732..1782655 (-) 924 WP_043039419.1 ATP-binding cassette domain-containing protein Regulator
  FGK99_RS08515 (NCTC4675_01726) amiE 1782648..1783718 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  FGK99_RS08520 (NCTC4675_01727) amiD 1783727..1784653 (-) 927 WP_138119766.1 oligopeptide ABC transporter permease OppC Regulator
  FGK99_RS08525 (NCTC4675_01728) amiC 1784653..1786152 (-) 1500 WP_138119768.1 ABC transporter permease Regulator
  FGK99_RS08530 (NCTC4675_01729) amiA3 1786216..1788192 (-) 1977 WP_138119770.1 peptide ABC transporter substrate-binding protein Regulator
  FGK99_RS08535 (NCTC4675_01730) pbp3 1788500..1789738 (+) 1239 WP_138119772.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  FGK99_RS08540 (NCTC4675_01731) pbp3 1790061..1791296 (+) 1236 WP_138119774.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  FGK99_RS08545 (NCTC4675_01732) - 1791380..1792561 (+) 1182 WP_012516285.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72863.29 Da        Isoelectric Point: 5.2398

>NTDB_id=1127203 FGK99_RS08530 WP_138119770.1 1786216..1788192(-) (amiA3) [Streptococcus equi subsp. zooepidemicus strain NCTC4675]
MKKSKWLTTLGVAALSVSILAACGNSSSKSSESKIYSYVYSSDPSTLDYISTSKATTNDITTNAVDGLLENDQYGNLIPS
LAKDWKVSKDGLTYTYTLRDGIKWYTSDGEEYADVTAEDFVAGVKHAADVNSDALYIIQDSIKGLNDYLNGKTKDFSTVG
VKALDKKTVQYTLNQPESFWNSKLTYSVLAPVNADFLKSKGKDFGKATDPSSILYNGPFLITALTSKSSIELVKNENYWD
AKNVHLDGVQLTFYDGQDQESLFRNFDDGAYSAARLFPTTPSYKTVKKKYGDSITYGQQNATLYYAAFNLNRTSYNHTKK
TSDSQKSDTQKAILNKDFRQAMTFAFDRIAYQAQSAGEDAANKSLRSTLVPPTFVQIGDKNFGDVVEEHLVTYGSQWENV
NLDDAQDGLYNPEKAKASFEKAKAALQAEGVQFPIHLDYPMDQTATVLLQQARSMKQSIEKTLGTDNVVIDIIELQKDVY
ENISYLAETPAQNDWDISTASGWGPDYVDPSSYLDIFNPTLANSQTKSIGLEPGKDLAIASAAGLDEFTKLVTEAGKITD
DLNARYTLYAKAQAALTDSAIYIPTISLGGTPRVTKVVPFSGAFAWAGTKNDFYYKYVKLQDKPVTAKQYDKALAEWKKE
KKKSNEKYNNSLEKHIEK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=1127203 FGK99_RS08530 WP_138119770.1 1786216..1788192(-) (amiA3) [Streptococcus equi subsp. zooepidemicus strain NCTC4675]
ATGAAGAAAAGTAAATGGTTGACAACGCTGGGTGTCGCAGCGCTGTCGGTGTCCATCCTGGCAGCCTGTGGAAACAGCTC
AAGTAAAAGCAGTGAATCAAAGATTTATAGCTATGTCTATTCTAGTGATCCAAGTACTTTAGACTATATCAGTACAAGTA
AAGCAACAACAAATGACATAACAACAAATGCTGTTGATGGGCTTTTGGAAAATGACCAATATGGGAATTTAATCCCCTCT
CTTGCTAAGGATTGGAAGGTCTCAAAGGACGGCTTGACCTATACCTACACGCTTCGTGATGGGATTAAGTGGTACACATC
TGATGGAGAAGAGTATGCAGATGTGACAGCTGAGGATTTTGTAGCTGGAGTAAAGCACGCAGCAGATGTTAACTCTGATG
CCCTATATATCATTCAGGACTCTATTAAAGGCTTAAACGATTACTTGAACGGTAAGACCAAGGACTTTTCAACCGTAGGT
GTCAAAGCACTTGACAAAAAAACAGTTCAGTACACCCTTAATCAACCAGAAAGCTTCTGGAATTCAAAGCTAACTTATAG
TGTCCTAGCTCCGGTAAATGCTGACTTCCTAAAATCAAAGGGCAAGGATTTTGGTAAGGCAACAGATCCATCATCTATTC
TGTATAATGGCCCATTTCTTATCACAGCTTTGACAAGTAAATCCTCTATCGAGCTTGTCAAAAACGAAAACTATTGGGAC
GCTAAGAATGTTCACCTTGATGGTGTTCAATTGACCTTTTACGATGGACAGGATCAGGAGTCGTTGTTTAGAAACTTTGA
TGACGGTGCTTACTCAGCGGCGAGATTATTCCCAACAACACCTTCTTACAAAACCGTTAAGAAAAAATATGGGGATAGCA
TCACTTACGGACAACAAAATGCTACTCTCTACTATGCGGCATTTAACCTAAACCGTACGTCTTACAACCACACTAAGAAG
ACCTCAGATAGCCAAAAATCAGATACCCAAAAGGCTATCTTAAACAAGGATTTCCGTCAGGCTATGACATTTGCCTTTGA
TAGAATTGCTTATCAGGCGCAATCAGCAGGTGAAGATGCAGCTAACAAATCGCTTCGTAGCACACTTGTGCCACCGACAT
TTGTGCAAATTGGCGACAAAAACTTTGGTGATGTTGTTGAGGAGCACTTGGTGACCTATGGTAGCCAGTGGGAAAATGTA
AATCTAGATGATGCACAGGATGGCTTGTACAATCCTGAAAAGGCAAAAGCATCATTTGAAAAAGCAAAAGCAGCCCTACA
AGCTGAGGGTGTACAGTTCCCAATCCATCTTGATTACCCAATGGATCAAACTGCAACGGTGCTCTTACAGCAGGCTCGCT
CTATGAAGCAGTCAATTGAGAAAACATTAGGAACTGACAATGTTGTGATTGATATTATTGAGCTTCAGAAAGATGTTTAT
GAAAATATTAGTTATCTCGCCGAAACTCCTGCTCAAAATGACTGGGATATTTCAACGGCTTCTGGCTGGGGACCTGATTA
TGTCGACCCATCGTCATATCTTGATATTTTCAACCCAACGCTTGCGAACTCACAAACAAAATCAATTGGACTTGAGCCAG
GTAAGGATTTGGCCATTGCTAGTGCAGCTGGCTTAGACGAATTTACAAAGCTAGTGACAGAGGCAGGCAAGATTACTGAT
GATCTCAACGCCCGCTACACGCTCTATGCTAAGGCTCAAGCGGCATTGACAGACTCTGCTATTTACATCCCGACTATTTC
ACTTGGTGGAACACCACGTGTAACTAAAGTGGTACCGTTTTCAGGCGCCTTTGCTTGGGCTGGTACTAAAAATGACTTTT
ATTACAAATACGTCAAGCTACAAGATAAGCCTGTAACTGCTAAACAATATGACAAAGCATTAGCCGAGTGGAAAAAAGAA
AAGAAAAAATCTAACGAAAAATATAATAATTCCCTCGAGAAGCATATTGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMG 18311

56.364

100

0.565
  amiA3 Streptococcus thermophilus LMD-9

56.212

100

0.564
  amiA Streptococcus salivarius strain HSISS4

55.994

100

0.561

Multiple sequence alignment