Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   FGK99_RS08510 Genome accession   NZ_LR594033
Coordinates   1781732..1782655 (-) Length   307 a.a.
NCBI ID   WP_043039419.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC4675     
Function   internalize XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1780171..1781334 1781732..1782655 flank 398


Gene organization within MGE regions


Location: 1780171..1782655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK99_RS08505 (NCTC4675_01724) - 1780171..1781334 (+) 1164 WP_043026865.1 IS30-like element ISSeq6 family transposase -
  FGK99_RS08510 (NCTC4675_01725) amiF 1781732..1782655 (-) 924 WP_043039419.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34728.93 Da        Isoelectric Point: 6.7108

>NTDB_id=1127199 FGK99_RS08510 WP_043039419.1 1781732..1782655(-) (amiF) [Streptococcus equi subsp. zooepidemicus strain NCTC4675]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNETSSGEIRYDGKIINGKKSKS
EANELIRKIQMIFQDPAASLNERATVDYIISEGLYNFNLFKTEDERKEKIKQMMSEVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMDPEFVIADEPISALDVSVRAQVLNLLKKIQAEKDLTYLFIAHDLSVVRFISDRIAVIHKGVIVEVAETEELFV
NPVHPYTKSLLSAVPIPDPILERQKKLVVYHPEQHDYSVDKPSMVEIKPNHFVWANQAEAERYRKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=1127199 FGK99_RS08510 WP_043039419.1 1781732..1782655(-) (amiF) [Streptococcus equi subsp. zooepidemicus strain NCTC4675]
ATGTCTGAAAAATTAGTTGAAGTAAAAGACCTGGAGATTTCCTTTGGAGAGGGAAAGAAAAAGTTTGTTGCCGTTAAAAA
TGCCAATTTCTTTATCAATAAAGGAGAAACCTTTTCTCTTGTTGGAGAATCAGGCAGCGGAAAGACAACAATAGGTCGTG
CTATCATTGGCTTAAATGAAACAAGCTCAGGCGAAATCCGCTATGACGGTAAGATTATTAATGGTAAAAAATCAAAATCT
GAAGCTAATGAACTGATTAGAAAAATCCAAATGATTTTTCAAGACCCAGCAGCCAGCCTGAATGAGCGTGCAACGGTTGA
TTATATCATCTCAGAAGGTCTTTATAATTTTAACCTATTCAAGACAGAAGACGAACGTAAAGAAAAAATTAAACAGATGA
TGTCAGAGGTGGGCTTGCTTGCAGAGCACCTGACACGCTACCCTCATGAGTTTTCAGGTGGGCAGCGTCAGCGTATAGGC
ATTGCAAGAGCACTTGTAATGGATCCAGAGTTTGTCATTGCTGATGAGCCAATTTCAGCTCTTGATGTATCTGTTCGTGC
TCAGGTCTTGAATCTGTTGAAGAAAATCCAGGCTGAAAAAGACTTGACCTATTTATTCATTGCTCATGATTTATCGGTTG
TGCGTTTTATTTCAGATCGTATTGCTGTTATTCACAAAGGAGTAATTGTTGAAGTCGCTGAAACAGAAGAGCTTTTTGTT
AATCCTGTTCACCCTTATACCAAATCTCTGTTGTCAGCAGTACCAATTCCAGATCCCATTTTAGAGCGTCAAAAGAAATT
GGTGGTCTATCATCCAGAGCAGCATGACTATTCTGTTGACAAGCCATCAATGGTGGAAATCAAACCAAATCACTTCGTCT
GGGCTAACCAGGCGGAAGCGGAGCGTTACCGCAAAGAGCTTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

82.68

99.674

0.824
  amiF Streptococcus thermophilus LMD-9

82.353

99.674

0.821
  amiF Streptococcus salivarius strain HSISS4

82.353

99.674

0.821

Multiple sequence alignment