Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   FGK99_RS08520 Genome accession   NZ_LR594033
Coordinates   1783727..1784653 (-) Length   308 a.a.
NCBI ID   WP_138119766.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC4675     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1778727..1789653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK99_RS08505 (NCTC4675_01724) - 1780171..1781334 (+) 1164 WP_043026865.1 IS30-like element ISSeq6 family transposase -
  FGK99_RS08510 (NCTC4675_01725) amiF 1781732..1782655 (-) 924 WP_043039419.1 ATP-binding cassette domain-containing protein Regulator
  FGK99_RS08515 (NCTC4675_01726) amiE 1782648..1783718 (-) 1071 WP_012516279.1 ABC transporter ATP-binding protein Regulator
  FGK99_RS08520 (NCTC4675_01727) amiD 1783727..1784653 (-) 927 WP_138119766.1 oligopeptide ABC transporter permease OppC Regulator
  FGK99_RS08525 (NCTC4675_01728) amiC 1784653..1786152 (-) 1500 WP_138119768.1 ABC transporter permease Regulator
  FGK99_RS08530 (NCTC4675_01729) amiA3 1786216..1788192 (-) 1977 WP_138119770.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34536.40 Da        Isoelectric Point: 7.1547

>NTDB_id=1127201 FGK99_RS08520 WP_138119766.1 1783727..1784653(-) (amiD) [Streptococcus equi subsp. zooepidemicus strain NCTC4675]
MAAIDKNKFTFVELDSYASEVIDAPAYSYWKSVFRQFFSRKSTILMLVILIAIILMSFIYPMFANYDFGDVSNINDFSKR
YIAPNAEYWFGTDQNGQSLFDGVWYGARNSILISVIATIINMIIGVIVGGIWGVSKAVDKVMIEVYNIISNLPQMLVIIV
LTYSIGAGFWNLIFAFCVTGWIGIAYSIRVQILRYRDLEYNLASQTLGTSTHKIVIKNLLPQLVSVIVSMVSLLLPSYIS
SEAFLSFFGLGLPITEPSLGRLISNYSNNLTTNAYLFWIPLTTLILVSLPLYIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1127201 FGK99_RS08520 WP_138119766.1 1783727..1784653(-) (amiD) [Streptococcus equi subsp. zooepidemicus strain NCTC4675]
ATGGCAGCAATTGACAAAAATAAATTCACCTTTGTTGAATTAGATAGCTATGCATCAGAAGTCATTGATGCCCCTGCTTA
CTCTTATTGGAAATCTGTATTTAGACAATTTTTCTCACGTAAATCAACTATTTTGATGCTGGTTATTTTGATTGCTATTA
TTTTGATGAGCTTCATCTACCCTATGTTTGCCAACTATGACTTTGGTGACGTGAGCAATATTAATGATTTTTCAAAACGT
TATATAGCACCTAATGCAGAGTATTGGTTTGGTACGGATCAAAATGGTCAATCGCTCTTTGATGGTGTTTGGTATGGTGC
TAGAAATTCAATCTTAATTTCAGTTATTGCAACCATCATCAATATGATTATCGGAGTCATTGTCGGTGGTATTTGGGGTG
TTTCCAAAGCAGTTGATAAGGTAATGATTGAGGTGTATAATATCATCTCTAACCTGCCGCAAATGCTCGTTATCATTGTG
TTGACTTATTCTATCGGAGCAGGCTTTTGGAACTTGATTTTTGCTTTTTGTGTGACAGGCTGGATTGGAATTGCTTATTC
GATTCGTGTACAAATTTTGCGTTATCGTGATTTAGAATACAATTTAGCAAGTCAGACCTTAGGAACATCCACCCATAAAA
TTGTCATTAAAAATCTTTTGCCTCAATTGGTTTCGGTGATCGTTTCGATGGTTTCCTTGCTGTTGCCGTCCTATATTTCA
TCAGAGGCCTTCTTATCCTTCTTTGGCTTGGGATTACCAATCACAGAACCAAGCTTGGGTCGATTGATTTCAAATTATTC
AAACAATTTAACAACAAATGCCTATTTATTCTGGATTCCATTGACAACTCTTATTCTTGTTTCCCTACCTTTATACATTG
TAGGACAAAACTTAGCAGATGCTAGTGATCCAAGGACGCATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

75.325

100

0.753
  amiD Streptococcus thermophilus LMG 18311

74.675

100

0.747
  amiD Streptococcus thermophilus LMD-9

74.675

100

0.747

Multiple sequence alignment