Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   FGK94_RS09415 Genome accession   NZ_LR590471
Coordinates   1995945..1996655 (+) Length   236 a.a.
NCBI ID   WP_012515994.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11854     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1990945..2001655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK94_RS09395 (NCTC11854_01930) - 1991771..1992310 (+) 540 WP_138083168.1 hypothetical protein -
  FGK94_RS09400 (NCTC11854_01931) - 1992307..1993422 (+) 1116 WP_014623191.1 acetyl-CoA C-acyltransferase -
  FGK94_RS09405 (NCTC11854_01932) - 1993412..1994674 (+) 1263 WP_043029945.1 AMP-binding protein -
  FGK94_RS09410 (NCTC11854_01933) - 1994720..1995736 (+) 1017 WP_042671148.1 DUF3114 domain-containing protein -
  FGK94_RS09415 (NCTC11854_01934) vicR 1995945..1996655 (+) 711 WP_012515994.1 response regulator YycF Regulator
  FGK94_RS09420 (NCTC11854_01935) vicK 1996648..1998000 (+) 1353 WP_043029944.1 cell wall metabolism sensor histidine kinase VicK Regulator
  FGK94_RS09425 (NCTC11854_01936) vicX 1998004..1998813 (+) 810 WP_021320992.1 MBL fold metallo-hydrolase Regulator
  FGK94_RS09430 (NCTC11854_01937) - 1998952..2000211 (-) 1260 WP_014622678.1 ISL3-like element ISSeq1 family transposase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26981.84 Da        Isoelectric Point: 4.9038

>NTDB_id=1126906 FGK94_RS09415 WP_012515994.1 1995945..1996655(+) (vicR) [Streptococcus equi subsp. zooepidemicus strain NCTC11854]
MKKILIVDDEKPISDIIKFNLTKEGYDTVTAFDGKEAVAVFEEEKPDLIILDLMLPELDGLEVAKEIRKTSHIPIIMLSA
KDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRRTETIETAVAEENASSGSQELTIGNLQILPDAFIAKKHGQEVE
LTHREFELLHHLANHIGQVMTREHLLETVWGYDYFGDVRTVDVTIRRLREKIEDTPSRPEYILTRRGVGYYMKAYD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1126906 FGK94_RS09415 WP_012515994.1 1995945..1996655(+) (vicR) [Streptococcus equi subsp. zooepidemicus strain NCTC11854]
ATGAAGAAAATACTGATTGTTGATGATGAAAAGCCGATTTCTGATATCATTAAATTTAATCTGACAAAGGAAGGCTATGA
TACGGTCACAGCATTTGATGGCAAAGAGGCCGTTGCAGTCTTTGAAGAGGAAAAGCCAGATTTGATTATTTTGGATTTGA
TGCTTCCTGAATTAGATGGCCTTGAGGTAGCCAAGGAAATCCGCAAGACCAGCCATATTCCTATCATCATGCTATCTGCT
AAGGATAGCGAATTTGATAAGGTGATTGGACTTGAAATAGGGGCTGATGATTATGTGACTAAGCCCTTTTCAAATCGTGA
GCTGCTGGCGCGTGTCAAGGCACATTTGCGTCGGACAGAGACTATTGAGACAGCAGTAGCCGAAGAAAATGCCTCCTCAG
GCTCTCAGGAGCTAACCATCGGCAATCTACAGATTTTACCAGATGCCTTTATCGCTAAAAAGCATGGTCAAGAGGTTGAG
CTGACCCATCGTGAGTTTGAATTGCTGCATCATCTGGCAAACCATATCGGACAGGTCATGACACGTGAGCATTTGCTTGA
GACCGTATGGGGCTACGATTATTTTGGCGATGTCCGAACCGTTGACGTTACTATCCGTCGCCTGCGCGAAAAAATAGAGG
ATACACCGAGTCGTCCAGAGTATATTTTGACAAGACGTGGTGTTGGGTACTACATGAAGGCTTATGACTAA

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

88.983

100

0.89
  micA Streptococcus pneumoniae Cp1015

78.112

98.729

0.771
  covR Lactococcus lactis subsp. lactis strain DGCC12653

44.828

98.305

0.441
  covR Streptococcus salivarius strain HSISS4

44.397

98.305

0.436
  scnR Streptococcus mutans UA159

38.034

99.153

0.377

Multiple sequence alignment