Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   FGK83_RS09160 Genome accession   NZ_LR590465
Coordinates   1860452..1860799 (-) Length   115 a.a.
NCBI ID   WP_162627426.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC8468     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1855452..1865799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK83_RS09140 (NCTC8468_01844) bioB 1855841..1856842 (-) 1002 WP_138172173.1 biotin synthase BioB -
  FGK83_RS09145 (NCTC8468_01845) thiQ 1856955..1857602 (-) 648 WP_138172174.1 thiamine ABC transporter ATP-binding protein -
  FGK83_RS09150 (NCTC8468_01846) thiP 1857586..1859202 (-) 1617 WP_138172175.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  FGK83_RS09155 (NCTC8468_01847) thiB 1859207..1860205 (-) 999 WP_138172176.1 thiamine ABC transporter substrate binding subunit -
  FGK83_RS09160 (NCTC8468_01849) comE1/comEA 1860452..1860799 (-) 348 WP_162627426.1 helix-hairpin-helix domain-containing protein Machinery gene
  FGK83_RS09165 (NCTC8468_01850) ispH 1860968..1861912 (-) 945 WP_005659294.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  FGK83_RS09170 (NCTC8468_01851) lspA 1861909..1862424 (-) 516 WP_050948645.1 signal peptidase II -
  FGK83_RS09175 (NCTC8468_01852) - 1862494..1863675 (-) 1182 WP_420026318.1 phosphoethanolamine transferase -
  FGK83_RS09470 (NCTC8468_01853) - 1863745..1864053 (-) 309 WP_232043383.1 hypothetical protein -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12335.18 Da        Isoelectric Point: 8.0085

>NTDB_id=1126760 FGK83_RS09160 WP_162627426.1 1860452..1860799(-) (comE1/comEA) [Haemophilus influenzae strain NCTC8468]
MKLMKTLFTSVVLCGALVASSSFAEEKATEQTAQPVVATQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNVEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=1126760 FGK83_RS09160 WP_162627426.1 1860452..1860799(-) (comE1/comEA) [Haemophilus influenzae strain NCTC8468]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGCGCTGGTTGCTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAACCTGTTGTAGCAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGTAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

94.643

97.391

0.922
  comEA/comE1 Glaesserella parasuis strain SC1401

59.649

99.13

0.591
  comEA Vibrio cholerae C6706

42.727

95.652

0.409
  comEA Vibrio cholerae strain A1552

42.727

95.652

0.409
  comEA Vibrio campbellii strain DS40M4

39.286

97.391

0.383

Multiple sequence alignment