Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FGK83_RS08505 Genome accession   NZ_LR590465
Coordinates   1730263..1731792 (+) Length   509 a.a.
NCBI ID   WP_138172132.1    Uniprot ID   -
Organism   Haemophilus influenzae strain NCTC8468     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1725263..1736792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK83_RS08480 (NCTC8468_01707) oppC 1725609..1726544 (+) 936 WP_005651799.1 oligopeptide ABC transporter permease OppC -
  FGK83_RS08485 (NCTC8468_01708) - 1726554..1727525 (+) 972 WP_138172130.1 ABC transporter ATP-binding protein -
  FGK83_RS08490 (NCTC8468_01709) oppF 1727522..1728520 (+) 999 WP_042601994.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  FGK83_RS08495 (NCTC8468_01710) - 1728560..1729426 (-) 867 WP_171007184.1 VirK/YbjX family protein -
  FGK83_RS08500 (NCTC8468_01711) yihA 1729531..1730148 (+) 618 WP_105880818.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  FGK83_RS08505 (NCTC8468_01712) comM 1730263..1731792 (+) 1530 WP_138172132.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FGK83_RS08510 (NCTC8468_01713) deoC 1731826..1732497 (-) 672 WP_116966718.1 deoxyribose-phosphate aldolase -
  FGK83_RS08515 (NCTC8468_01714) - 1732608..1733111 (+) 504 WP_050848337.1 protein disulfide oxidoreductase -
  FGK83_RS08520 (NCTC8468_01715) rfaD 1733164..1734090 (+) 927 WP_112082658.1 ADP-glyceromanno-heptose 6-epimerase -
  FGK83_RS08525 (NCTC8468_01716) waaF 1734176..1735216 (+) 1041 WP_138172133.1 lipopolysaccharide heptosyltransferase II -
  FGK83_RS08530 (NCTC8468_01717) - 1735325..1736548 (-) 1224 WP_138172134.1 MFS transporter -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 56089.60 Da        Isoelectric Point: 9.7681

>NTDB_id=1126759 FGK83_RS08505 WP_138172132.1 1730263..1731792(+) (comM) [Haemophilus influenzae strain NCTC8468]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDASRLKQFEFVAELALTGQLRGVHGVIPAILAAQKSKRELIIAKQNANEASLVSDQNTYFAQTL
LDVVQFLNGQEKLPIVTEIVKESAVNFSGKNTLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMTDLESIETASVTSLVQNELNFHNWKQRPFRAPHHSASMPALVGGGTIPKPGEISLATHSVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSTQVREKVLKVREIQMERAGKINAYLNSKEIERDCKLNDKDAFFLEKALNKLGLSVRAYHRILKVSRTIADLQ
EEQQISQPHLAEALGYRAMDRLLQKLSNM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=1126759 FGK83_RS08505 WP_138172132.1 1730263..1731792(+) (comM) [Haemophilus influenzae strain NCTC8468]
ATGTCCCTTGCTATTGTTTACAGCCGTGCCTCTATGGGGGTGCAAGCGCCGCTTGTTACTATTGAGGTACATTTAAGCAA
CGGAAAACCCGGATTTACACTTGTTGGTTTGCCCGAAAAAACCGTGAAAGAGGCACAAGATCGGGTGCGTAGTGCATTGA
TGAATGCACAATTTAAATACCCAGCCAAACGCATTACCGTGAATCTCGCACCAGCAGATTTACCGAAAGAAGGCGGACGA
TTTGATTTGCCTATTGCTATCGGAATTTTAGCTGCATCGGATCAGCTTGATGCGAGCCGCTTAAAGCAATTTGAATTTGT
GGCAGAGCTTGCGCTAACGGGGCAATTGCGTGGCGTACACGGTGTAATTCCCGCTATTCTTGCAGCGCAAAAGTCAAAGC
GAGAGTTAATTATCGCAAAGCAAAATGCCAATGAAGCCTCACTTGTTTCTGATCAAAATACTTATTTTGCGCAAACACTT
TTAGATGTGGTGCAATTTCTCAATGGTCAGGAAAAATTACCTATCGTCACTGAAATTGTGAAAGAAAGTGCGGTAAATTT
TTCGGGTAAAAATACATTAGATTTAACGGATATTATTGGACAACAGCACGCTAAACGTGCATTAACCATTGCCGCAGCGG
GGCAGCATAATTTACTCTTTCTTGGCCCACCGGGTACAGGGAAAACCATGTTAGCCAGCCGATTAACAGGGCTTTTACCT
GAAATGACTGATTTAGAATCGATAGAAACGGCATCTGTAACGAGTTTAGTGCAAAACGAGTTAAATTTTCATAATTGGAA
ACAACGTCCTTTTCGCGCACCGCACCATAGTGCATCAATGCCGGCTTTAGTTGGAGGCGGAACGATCCCTAAACCTGGCG
AAATATCCTTAGCCACACATAGCGTACTTTTTCTTGATGAACTTCCAGAGTTTGAACGAAAAGTATTGGATGCACTACGT
CAGCCTTTGGAAAGTGGCGAGATTATTATTTCTCGTGCTAATGCCAAAATCCAATTTCCAGCTCGTTTTCAATTGGTGGC
AGCGATGAATCCAAGCCCCACAGGTCATTATACTGGAACACATAACCGCACTTCACCGCAACAAATTATGCGTTATTTAA
ATCGACTTTCAGGGCCCTTTTTAGATCGCTTTGACTTGTCTATTGAAGTGCCTTTATTGCCACAAGGTAGCTTACAAAAT
ACGGGCGATCGTGGCGAAACCAGCACACAAGTTCGTGAAAAAGTGTTAAAAGTGCGAGAGATTCAAATGGAAAGAGCGGG
GAAAATTAACGCTTATTTGAACAGTAAAGAGATTGAGCGTGATTGCAAGTTAAACGATAAAGATGCCTTTTTCCTTGAAA
AAGCATTGAATAAACTTGGGCTTTCTGTTCGGGCTTATCATCGTATTTTGAAAGTATCTCGAACCATTGCCGATCTACAA
GAAGAACAACAAATTTCTCAACCGCACTTGGCTGAGGCCTTGGGCTATCGAGCAATGGATCGTTTGTTGCAGAAATTGTC
GAATATGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

98.035

100

0.98
  comM Glaesserella parasuis strain SC1401

78.304

99.607

0.78
  comM Vibrio cholerae strain A1552

66.272

99.607

0.66
  comM Vibrio campbellii strain DS40M4

64.892

99.607

0.646
  comM Legionella pneumophila str. Paris

50.895

98.821

0.503
  comM Legionella pneumophila strain ERS1305867

50.895

98.821

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.898

100

0.462

Multiple sequence alignment