Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OU5_RS18285 Genome accession   NZ_CP005960
Coordinates   4134199..4135692 (-) Length   497 a.a.
NCBI ID   WP_010465119.1    Uniprot ID   A0A024EDW0
Organism   Pseudomonas mandelii JR-1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4129199..4140692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU5_RS18265 (OU5_3652) - 4130367..4131743 (-) 1377 WP_010465126.1 SrfA family protein -
  OU5_RS18270 (OU5_3653) - 4132010..4133221 (+) 1212 WP_010465124.1 aldose 1-epimerase family protein -
  OU5_RS18275 (OU5_3654) - 4133274..4133576 (-) 303 WP_010465122.1 hypothetical protein -
  OU5_RS18280 (OU5_3655) - 4133563..4134141 (-) 579 WP_010465121.1 hypothetical protein -
  OU5_RS18285 (OU5_3656) comM 4134199..4135692 (-) 1494 WP_010465119.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OU5_RS18290 (OU5_3657) - 4135987..4136265 (+) 279 WP_042932484.1 HigA family addiction module antitoxin -
  OU5_RS18295 (OU5_3658) - 4136262..4136789 (-) 528 WP_010465114.1 BRO-N domain-containing protein -
  OU5_RS18300 (OU5_3659) - 4137210..4137470 (-) 261 WP_010465113.1 accessory factor UbiK family protein -
  OU5_RS18305 (OU5_3660) glnK 4137888..4138226 (+) 339 WP_002555808.1 P-II family nitrogen regulator -
  OU5_RS18310 (OU5_3661) - 4138264..4139601 (+) 1338 WP_010465110.1 ammonium transporter -
  OU5_RS18315 (OU5_3662) - 4139816..4140241 (+) 426 WP_008030499.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  OU5_RS18320 (OU5_3663) sutA 4140343..4140666 (+) 324 WP_010465107.1 transcriptional regulator SutA -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53014.08 Da        Isoelectric Point: 7.8712

>NTDB_id=112639 OU5_RS18285 WP_010465119.1 4134199..4135692(-) (comM) [Pseudomonas mandelii JR-1]
MSLSIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDIECLGELALSGAVRAVRGVLPAALAARKAGRSLMVPRANAEEACLASGLKVFAVDHL
LEAVAHFNGHTPVEPYVSNGLLYASKPYPDLNEVQGQISAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
NEALEVAAIQSVTSCVPLSHWPQRPFRQPHHSASGPALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVISRAKDRVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPALKP
GDDTATAAELVAAARERQNKRQGCANAFLDLPGLRRHCELSTTDEAWLETACERLTLSLRSAHRLLKVARTLADLEQVNA
ITREHLAEALQYRPASA

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=112639 OU5_RS18285 WP_010465119.1 4134199..4135692(-) (comM) [Pseudomonas mandelii JR-1]
ATGTCCCTCTCCATCGTCCACAGCCGCGCCCAGATTGGCGTGGATGCGCCCGCCGTTACCGTAGAAGTCCATCTGGCCAA
CGGCTTGCCGTCGCTGACGATGGTCGGTTTGCCCGAAGCAGCAGTGAAGGAAAGCAAGGACCGGGTACGCAGCGCGATCA
TCAATTCAGGCCTGCAATTTCCGGCGCGGCGCATCACGCTGAATCTCGCGCCTGCGGACTTACCTAAAGATGGTGGACGG
TTTGATCTGGCGATCGCCTTGGGGATTCTGTCCGCCAGCGTGCAGGTGCCGACATTGACACTGGATGACATTGAATGCCT
GGGAGAATTGGCGCTGTCAGGCGCGGTACGTGCCGTGAGGGGCGTGCTGCCGGCTGCGCTGGCTGCGCGCAAGGCCGGAC
GCTCGCTGATGGTGCCGCGGGCGAATGCCGAGGAAGCCTGCCTGGCGTCGGGATTGAAGGTGTTTGCCGTGGATCACCTG
CTGGAAGCCGTTGCGCACTTCAATGGACATACGCCGGTCGAACCCTACGTTTCCAATGGCTTGCTCTATGCCAGCAAACC
CTATCCGGACTTGAATGAGGTGCAGGGGCAAATCTCGGCCAAGCGCGCATTGCTGATTGCGGCGGCTGGGGCTCATAACC
TGCTGTTTAGCGGACCGCCGGGGACCGGGAAAACGTTGCTGGCGAGTCGGTTGCCGGGTTTGCTTCCACCGCTCGCCGAA
AACGAGGCGCTGGAAGTCGCTGCCATTCAATCCGTCACCAGTTGCGTGCCCCTGAGCCACTGGCCGCAAAGACCCTTCCG
CCAGCCCCATCACTCGGCCTCCGGCCCAGCGCTGGTGGGTGGTGGTTCGAAACCGCAACCCGGCGAAATCACCCTCGCCC
ACCACGGCGTGCTGTTCCTCGATGAACTTCCGGAATTCGATCGCAAGGTGTTGGAGGTTTTAAGGGAGCCGCTGGAGTCC
GGCCACATCGTGATTTCCCGCGCCAAGGACCGCGTGAGGTTTCCGGCCCGCTTTCAATTGGTGGCCGCGATGAACCCCTG
CCCCTGTGGATATCTCGGCGAACCCAGTGGCAAATGCAGCTGTACACCGGACATGGTCCAGCGTTACCGAAACAAACTGT
CAGGACCGCTGCTGGATCGCATCGACCTGCATCTGACCGTCGCACGGGAAGCCACGGCGTTGAATCCTGCGCTCAAACCC
GGTGATGACACCGCCACTGCTGCGGAACTGGTCGCCGCCGCCCGGGAGCGTCAAAACAAACGCCAAGGTTGTGCCAACGC
ATTCCTTGATTTGCCGGGCCTGCGTCGACACTGCGAGTTATCCACAACCGATGAAGCCTGGCTGGAAACCGCCTGCGAGC
GTTTGACCTTGTCACTCCGGTCGGCCCACCGCCTGCTAAAGGTAGCCCGTACATTGGCAGATCTTGAACAGGTAAATGCA
ATCACCCGCGAGCATTTGGCGGAAGCGCTGCAATACCGACCTGCCTCAGCGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A024EDW0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

54.949

99.598

0.547
  comM Vibrio cholerae strain A1552

54.545

99.598

0.543
  comM Haemophilus influenzae Rd KW20

53.106

100

0.533
  comM Glaesserella parasuis strain SC1401

52.6

100

0.529
  comM Legionella pneumophila str. Paris

50.803

100

0.509
  comM Legionella pneumophila strain ERS1305867

50.803

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.908

100

0.463

Multiple sequence alignment