Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   PMYSY11_RS19965 Genome accession   NZ_LR215729
Coordinates   4369856..4371958 (-) Length   700 a.a.
NCBI ID   WP_069898568.1    Uniprot ID   -
Organism   Pseudomonas marincola strain YSy11     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4364856..4376958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMYSY11_RS19950 (PMYSY11_4116) - 4366520..4368067 (-) 1548 WP_150547831.1 SPOR domain-containing protein -
  PMYSY11_RS19955 (PMYSY11_4117) aroB 4368078..4369181 (-) 1104 WP_069898368.1 3-dehydroquinate synthase -
  PMYSY11_RS19960 (PMYSY11_4118) aroK 4369333..4369851 (-) 519 WP_150547832.1 shikimate kinase AroK -
  PMYSY11_RS19965 (PMYSY11_4119) pilQ 4369856..4371958 (-) 2103 WP_069898568.1 type IV pilus secretin PilQ Machinery gene
  PMYSY11_RS19970 (PMYSY11_4120) pilP 4372013..4372537 (-) 525 WP_069898370.1 type 4a pilus biogenesis lipoprotein PilP -
  PMYSY11_RS19975 (PMYSY11_4121) pilO 4372534..4373157 (-) 624 WP_069898371.1 type 4a pilus biogenesis protein PilO -
  PMYSY11_RS19980 (PMYSY11_4122) - 4373154..4373747 (-) 594 WP_069898372.1 PilN domain-containing protein -
  PMYSY11_RS19985 (PMYSY11_4123) pilM 4373747..4374811 (-) 1065 WP_069898373.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 75643.72 Da        Isoelectric Point: 4.8492

>NTDB_id=1125938 PMYSY11_RS19965 WP_069898568.1 4369856..4371958(-) (pilQ) [Pseudomonas marincola strain YSy11]
MNKPLTRLGVSLLAALVSPVLLAADLQNLDVASLPGGRVELKLQFDEPVAAPRGYTIEQPARIALDLPGVSNKLGSKNRE
LGVGNARSVTVVEANDRTRMIINLTNLAPYSTRVEGNNMYVLIGEGAGTAAAPVARAAATPAAPVVTSQPRVSAPKVYGA
ATRSIRNIDFQRGDQGEGNVVITLSDPSVSPDIQEQGGKIRLNFAKTQLAESLRVRLDVKDFATPVQFVNSSGSGDSTTV
VIEPTGFYDYLAYQTDNKLTISVKPLTQADQEKRKEDRFAYSGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVAGNI
TLRLQNVPWDQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELESQKQIAELAPLRRELIQVNYAKASDMAKLFQS
VTSADGSVDERGSITVDDRTNSIIAYQTQTRLDELRRIVTQLDVAVRQVMIEARIVEASVDYDKSLGVRWGGAKVIGGGK
WNIYGNDDQGDEAGNTGDDVGLNVPFVDLGVANRTAGLGIGFITDNTILDLELTAMEKTGNGEVVSQPKVVTSDKETARI
LKGSEIPYQEASSSGATTTQFVEAALSLEVTPQITPDNRIIMEVKVNKDEADFANQVNGTPTIRKNEVVAKVLVSDGETI
VIGGVFSNTQRKAVEKVPFLGDVPYVGRLFRRDIVQDSKSELLIFLTPRIMNTQAVAVGR

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=1125938 PMYSY11_RS19965 WP_069898568.1 4369856..4371958(-) (pilQ) [Pseudomonas marincola strain YSy11]
ATGAATAAGCCACTAACCCGTCTAGGCGTGTCTCTGCTCGCCGCACTGGTATCGCCAGTGCTGCTCGCAGCAGACCTCCA
GAATCTCGATGTTGCATCGCTTCCGGGCGGTCGTGTTGAACTCAAGCTGCAGTTTGACGAACCTGTTGCCGCTCCGCGTG
GCTACACCATCGAACAGCCTGCGCGTATCGCGCTCGACTTGCCGGGTGTTTCCAACAAGCTCGGCAGCAAGAATCGTGAG
CTGGGTGTGGGTAATGCGCGCAGCGTGACCGTGGTTGAGGCCAATGACCGCACGCGCATGATCATCAACCTGACCAACTT
GGCGCCTTACAGCACCCGTGTTGAAGGCAACAACATGTATGTGTTGATTGGTGAGGGTGCCGGCACTGCGGCAGCGCCAG
TTGCCCGCGCGGCTGCAACCCCTGCTGCGCCGGTTGTGACCTCGCAGCCGCGGGTCTCGGCTCCGAAGGTGTACGGTGCG
GCGACTCGCTCGATCCGCAATATCGATTTCCAGCGTGGCGATCAGGGTGAAGGCAACGTAGTCATCACCTTGTCCGACCC
GTCTGTGAGCCCGGATATTCAGGAGCAGGGCGGCAAGATTCGCCTGAACTTCGCCAAGACTCAGTTGGCTGAATCCTTGC
GCGTGCGTCTCGACGTTAAAGACTTCGCCACCCCGGTGCAGTTCGTTAACTCGAGCGGCAGCGGTGATTCCACGACCGTG
GTCATTGAGCCGACCGGTTTTTACGATTACCTCGCCTACCAGACGGATAATAAGCTGACCATCAGCGTTAAGCCGTTGAC
TCAGGCTGATCAGGAAAAGCGCAAAGAAGATCGTTTCGCTTACAGCGGCGAGAAGCTTTCGCTTAACTTCCAGGATATCG
ACGTGCGTTCGGTGCTGCAGCTGATTGCGGACTTCACCGACCTCAACTTGGTTGCCAGCGACACGGTTGCCGGCAACATC
ACCCTGCGCTTGCAGAATGTGCCCTGGGATCAGGCGCTGGATCTGGTGCTGAAAACCAAAGGTCTGGACAAGCGTAAAGT
CGGTAACGTACTGCTGGTTGCGCCAGCCGATGAAATTGCGGCGCGCGAGCGTCAGGAATTGGAGTCGCAGAAGCAAATCG
CCGAACTGGCGCCGCTGCGTCGCGAGCTGATTCAGGTCAACTACGCCAAAGCTTCAGACATGGCCAAGCTGTTCCAGTCG
GTCACCAGCGCCGATGGCTCTGTTGATGAGCGTGGCTCGATCACTGTCGATGACCGTACCAACAGCATCATCGCTTACCA
GACTCAAACGCGTCTGGACGAACTGCGCCGTATCGTGACTCAGCTCGACGTGGCCGTGCGTCAGGTAATGATCGAGGCGC
GGATCGTAGAGGCGAGCGTCGATTACGACAAGTCGCTGGGCGTACGTTGGGGCGGTGCCAAGGTTATTGGCGGCGGTAAA
TGGAACATTTACGGTAACGACGACCAAGGCGATGAGGCGGGTAATACCGGTGATGACGTGGGTCTGAACGTACCGTTCGT
GGATCTGGGCGTTGCCAACCGTACAGCGGGTCTGGGTATCGGCTTCATCACTGACAACACCATTCTGGACCTTGAGCTGA
CCGCCATGGAGAAGACCGGTAACGGTGAAGTGGTTTCTCAGCCCAAGGTTGTGACCTCGGATAAAGAAACGGCGCGCATC
CTCAAGGGTTCGGAGATTCCGTATCAGGAAGCCAGCTCCAGCGGTGCAACCACTACTCAGTTCGTGGAAGCTGCTCTGTC
GCTTGAAGTGACGCCGCAAATCACCCCGGACAACCGCATCATCATGGAAGTTAAAGTGAACAAGGACGAGGCCGACTTTG
CCAACCAGGTAAACGGCACGCCGACGATTCGCAAGAACGAAGTGGTTGCCAAGGTACTGGTGTCGGATGGCGAAACCATC
GTGATCGGTGGTGTGTTCTCCAACACTCAACGTAAGGCTGTCGAGAAAGTGCCATTTCTCGGTGATGTGCCTTATGTCGG
CCGTTTGTTCCGTCGGGATATCGTGCAGGACTCGAAGTCTGAGTTGCTGATTTTCCTGACCCCACGCATCATGAACACTC
AAGCAGTTGCGGTGGGCCGTTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(309-355)

Bacterial type II and III secretion system protein (Secretin)

(535-691)

Bacterial type II/III secretion system short domain (Secretin_N)

(383-448)

AMIN domain (AMIN)

(40-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

73.931

100

0.766
  pilQ Acinetobacter baumannii D1279779

39.481

100

0.413
  pilQ Acinetobacter baumannii strain A118

39.481

100

0.413
  comQ Acinetobacter baylyi ADP1

40.89

99.571

0.407

Multiple sequence alignment