Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L085_RS06285 Genome accession   NZ_CP005927
Coordinates   1375131..1375661 (+) Length   176 a.a.
NCBI ID   WP_004936793.1    Uniprot ID   A0AAW6X7L8
Organism   Serratia sp. FS14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1370131..1380661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L085_RS06270 (L085_06165) maa 1370154..1370711 (+) 558 WP_044030338.1 maltose O-acetyltransferase -
  L085_RS06275 (L085_06170) - 1370743..1371795 (-) 1053 WP_004936787.1 NAD(P)-dependent alcohol dehydrogenase -
  L085_RS06280 (L085_06175) uvrA 1372025..1374853 (-) 2829 WP_015379213.1 excinuclease ABC subunit UvrA -
  L085_RS06285 (L085_06180) ssb 1375131..1375661 (+) 531 WP_004936793.1 single-stranded DNA-binding protein SSB1 Machinery gene
  L085_RS06290 (L085_06185) - 1375747..1376703 (-) 957 WP_044030340.1 cyclase family protein -
  L085_RS06295 (L085_06190) - 1376923..1377135 (-) 213 WP_044030341.1 YdgH/BhsA/McbA-like domain containing protein -
  L085_RS06300 (L085_06195) - 1377369..1378118 (-) 750 WP_004936803.1 3-oxoacyl-ACP reductase family protein -
  L085_RS06305 (L085_06200) - 1378246..1379163 (+) 918 WP_044030342.1 LysR family transcriptional regulator -
  L085_RS06310 (L085_06205) - 1379219..1379479 (-) 261 WP_044030343.1 YdgH/BhsA/McbA-like domain containing protein -
  L085_RS06315 (L085_06210) - 1379675..1380118 (+) 444 WP_015379208.1 lipocalin-like domain-containing protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.71 Da        Isoelectric Point: 5.2358

>NTDB_id=112590 L085_RS06285 WP_004936793.1 1375131..1375661(+) (ssb) [Serratia sp. FS14]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=112590 L085_RS06285 WP_004936793.1 1375131..1375661(+) (ssb) [Serratia sp. FS14]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AATGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGGGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGCCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAGCCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCACCG
GCGACCAGCAACGAACCACCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.14

100

0.625
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364

Multiple sequence alignment