Detailed information NTG1125858

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: E0E35_RS22205
• Genome accession: NZ_LR213455
• Coordinates: 4281229..4281765 (+)
• Length: 178 a.a.
• NCBI ID: WP_073828084.1
• Uniprot ID: -
• Organism: Shigella flexneri strain AUSMDU00008332 isolate AUSMDU00008332
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	4281873..4282376	4281229..4281765	flank	108

Gene organization within MGE regions

Location: 4281229..4282376

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E0E35_RS22205	ssb	4281229..4281765 (+)	537	WP_073828084.1	single-stranded DNA-binding protein SSB1	Machinery gene

Sequence

Protein

• Length: 178 a.a.
• Molecular weight: 19051.09 Da
• Isoelectric Point: 5.2358

>NTDB_id=1125858 E0E35_RS22205 WP_073828084.1 4281229..4281765(+) (ssb) [Shigella flexneri strain AUSMDU00008332 isolate AUSMDU00008332]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPYNEPPMDFDDDIPF

Nucleotide

• Length: 537 bp

>NTDB_id=1125858 E0E35_RS22205 WP_073828084.1 4281229..4281765(+) (ssb) [Shigella flexneri strain AUSMDU00008332 isolate AUSMDU00008332]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTATAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (6-112)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Vibrio cholerae strain A1552	75.691	100	0.77
ssb	Glaesserella parasuis strain SC1401	57.923	100	0.596
ssb	Neisseria meningitidis MC58	48.066	100	0.489
ssb	Neisseria gonorrhoeae MS11	48.066	100	0.489
ssbA	Bacillus subtilis subsp. subtilis str. 168	36.111	100	0.365