Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ALT761_RS01225 | Genome accession | NZ_LR136958 |
| Coordinates | 298612..299199 (+) | Length | 195 a.a. |
| NCBI ID | WP_129735777.1 | Uniprot ID | - |
| Organism | Alteromonas sp. 76-1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 293612..304199
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ALT761_RS01210 (ALT761_00242) | - | 294308..295363 (+) | 1056 | WP_129735771.1 | UDP-glucose--hexose-1-phosphate uridylyltransferase | - |
| ALT761_RS01215 (ALT761_00243) | galK | 295356..296495 (+) | 1140 | WP_129735773.1 | galactokinase | - |
| ALT761_RS01220 (ALT761_00244) | - | 296767..298329 (+) | 1563 | WP_129735775.1 | sodium/sugar symporter | - |
| ALT761_RS01225 (ALT761_00245) | ssb | 298612..299199 (+) | 588 | WP_129735777.1 | single-stranded DNA-binding protein | Machinery gene |
| ALT761_RS01230 (ALT761_00246) | - | 299456..301648 (+) | 2193 | WP_129735778.1 | DUF3857 domain-containing protein | - |
| ALT761_RS01235 (ALT761_00247) | - | 301667..303010 (+) | 1344 | WP_129735780.1 | hypothetical protein | - |
| ALT761_RS01240 (ALT761_00248) | - | 303134..304051 (+) | 918 | WP_129735782.1 | dihydrodipicolinate synthase family protein | - |
Sequence
Protein
Download Length: 195 a.a. Molecular weight: 21356.26 Da Isoelectric Point: 4.9658
>NTDB_id=1125804 ALT761_RS01225 WP_129735777.1 298612..299199(+) (ssb) [Alteromonas sp. 76-1]
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDPQGQMQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQSGQDRYTTEIIVDQMQMLGGRGGEGGGGNAGGGYQRPQNNQQGGYQQQGGQNQGGYQQQGGQNQGGQNQ
GGYQQQAPNQGGGQSQPKQPPMAEPDFDFDDDIPF
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDPQGQMQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQSGQDRYTTEIIVDQMQMLGGRGGEGGGGNAGGGYQRPQNNQQGGYQQQGGQNQGGYQQQGGQNQGGQNQ
GGYQQQAPNQGGGQSQPKQPPMAEPDFDFDDDIPF
Nucleotide
Download Length: 588 bp
>NTDB_id=1125804 ALT761_RS01225 WP_129735777.1 298612..299199(+) (ssb) [Alteromonas sp. 76-1]
ATGGCAACGAAAGGCGTTAACAAGGTCATACTTGTGGGAAATCTAGGTAATGATCCTGAAGTACGATACATGCCTAACGG
TAACGCCGTTGCGAACCTAAGCTTGGCTACCAGCGAAAGCTGGAAAGATCCGCAAGGCCAAATGCAGGAACGCACTGAGT
GGCACCGCCTTACTATGTACCGTCGCTTAGCAGAAATTGCCGGAGAATACCTGAAAAAGGGTTCTCAAATTTACGTTGAA
GGTAAATTGCAAACGCGTAAGTGGCAAGATCAGTCAGGCCAAGACCGTTACACTACAGAAATCATTGTAGACCAAATGCA
AATGCTTGGTGGTCGCGGTGGTGAAGGTGGCGGTGGTAATGCGGGTGGCGGTTATCAACGCCCTCAGAATAACCAGCAAG
GTGGATACCAGCAACAAGGTGGCCAGAATCAAGGTGGTTATCAGCAGCAAGGCGGTCAAAATCAAGGTGGTCAAAACCAA
GGCGGTTACCAACAACAAGCGCCTAATCAAGGCGGTGGTCAGTCACAGCCTAAGCAGCCTCCAATGGCTGAGCCAGACTT
TGACTTTGATGACGACATTCCGTTTTAA
ATGGCAACGAAAGGCGTTAACAAGGTCATACTTGTGGGAAATCTAGGTAATGATCCTGAAGTACGATACATGCCTAACGG
TAACGCCGTTGCGAACCTAAGCTTGGCTACCAGCGAAAGCTGGAAAGATCCGCAAGGCCAAATGCAGGAACGCACTGAGT
GGCACCGCCTTACTATGTACCGTCGCTTAGCAGAAATTGCCGGAGAATACCTGAAAAAGGGTTCTCAAATTTACGTTGAA
GGTAAATTGCAAACGCGTAAGTGGCAAGATCAGTCAGGCCAAGACCGTTACACTACAGAAATCATTGTAGACCAAATGCA
AATGCTTGGTGGTCGCGGTGGTGAAGGTGGCGGTGGTAATGCGGGTGGCGGTTATCAACGCCCTCAGAATAACCAGCAAG
GTGGATACCAGCAACAAGGTGGCCAGAATCAAGGTGGTTATCAGCAGCAAGGCGGTCAAAATCAAGGTGGTCAAAACCAA
GGCGGTTACCAACAACAAGCGCCTAATCAAGGCGGTGGTCAGTCACAGCCTAAGCAGCCTCCAATGGCTGAGCCAGACTT
TGACTTTGATGACGACATTCCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
55.5 |
100 |
0.569 |
| ssb | Glaesserella parasuis strain SC1401 |
54.5 |
100 |
0.559 |
| ssb | Neisseria meningitidis MC58 |
48.438 |
98.462 |
0.477 |
| ssb | Neisseria gonorrhoeae MS11 |
48.438 |
98.462 |
0.477 |