Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | EL345_RS04715 | Genome accession | NZ_LR135170 |
| Coordinates | 908337..908822 (+) | Length | 161 a.a. |
| NCBI ID | WP_002346391.1 | Uniprot ID | - |
| Organism | Enterococcus faecium isolate E4227 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 903337..913822
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL345_RS04675 | - | 903586..904053 (-) | 468 | WP_223917846.1 | hypothetical protein | - |
| EL345_RS04680 | - | 904189..904530 (+) | 342 | WP_002333656.1 | hypothetical protein | - |
| EL345_RS04685 | - | 904523..905194 (+) | 672 | WP_002323907.1 | DUF1071 domain-containing protein | - |
| EL345_RS04690 | - | 905200..905886 (+) | 687 | WP_002346396.1 | putative HNHc nuclease | - |
| EL345_RS13735 | - | 905889..906587 (+) | 699 | WP_002346395.1 | helix-turn-helix domain-containing protein | - |
| EL345_RS04700 | - | 906577..907815 (+) | 1239 | WP_002346394.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| EL345_RS04705 | - | 907816..908004 (+) | 189 | WP_002346393.1 | hypothetical protein | - |
| EL345_RS04710 | - | 908001..908336 (+) | 336 | WP_002346392.1 | VRR-NUC domain-containing protein | - |
| EL345_RS04715 | ssbA | 908337..908822 (+) | 486 | WP_002346391.1 | single-stranded DNA-binding protein | Machinery gene |
| EL345_RS04720 | - | 908843..909004 (+) | 162 | WP_025478749.1 | hypothetical protein | - |
| EL345_RS04725 | - | 909001..909312 (+) | 312 | WP_080105880.1 | hypothetical protein | - |
| EL345_RS04730 | - | 909306..909596 (+) | 291 | WP_002311437.1 | hypothetical protein | - |
| EL345_RS04735 | - | 909596..909913 (+) | 318 | WP_002346388.1 | DUF1140 family protein | - |
| EL345_RS04740 | - | 909910..910113 (+) | 204 | WP_002346387.1 | hypothetical protein | - |
| EL345_RS04745 | - | 910110..910406 (+) | 297 | WP_126307885.1 | hypothetical protein | - |
| EL345_RS04750 | - | 910483..910899 (+) | 417 | WP_104775162.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| EL345_RS04755 | - | 911291..912238 (+) | 948 | WP_104775163.1 | Kiwa anti-phage protein KwaB-like domain-containing protein | - |
| EL345_RS04760 | - | 912264..912815 (+) | 552 | WP_126307888.1 | hypothetical protein | - |
| EL345_RS13740 | - | 912887..913117 (+) | 231 | WP_010725646.1 | hypothetical protein | - |
| EL345_RS04770 | - | 913114..913314 (+) | 201 | WP_002343507.1 | hypothetical protein | - |
| EL345_RS13990 | - | 913436..913681 (+) | 246 | WP_224783914.1 | HNH endonuclease signature motif containing protein | - |
Sequence
Protein
Download Length: 161 a.a. Molecular weight: 17839.61 Da Isoelectric Point: 7.9972
>NTDB_id=1124260 EL345_RS04715 WP_002346391.1 908337..908822(+) (ssbA) [Enterococcus faecium isolate E4227]
MINTVTLVGRLTKDPELRTTTSGTGVATFTLAVNRDFKDANGNREADFINCVAWRKTAEILANYAKKGSLIGLIGRIQTR
SYENQQGNRVFVTEVVVERFNLLESRSNNDTSVSNNQTTNYKGNNQNSSNDLSHAQNNQSKNVNSNPFDGSSMNTDLELP
F
MINTVTLVGRLTKDPELRTTTSGTGVATFTLAVNRDFKDANGNREADFINCVAWRKTAEILANYAKKGSLIGLIGRIQTR
SYENQQGNRVFVTEVVVERFNLLESRSNNDTSVSNNQTTNYKGNNQNSSNDLSHAQNNQSKNVNSNPFDGSSMNTDLELP
F
Nucleotide
Download Length: 486 bp
>NTDB_id=1124260 EL345_RS04715 WP_002346391.1 908337..908822(+) (ssbA) [Enterococcus faecium isolate E4227]
ATGATTAATACAGTGACTTTAGTAGGAAGATTGACAAAAGACCCAGAGCTTAGAACCACAACAAGTGGAACAGGAGTAGC
GACTTTCACATTAGCAGTAAATCGTGACTTCAAAGATGCGAATGGAAATAGAGAAGCAGACTTTATCAATTGTGTAGCGT
GGAGAAAAACAGCTGAAATTTTAGCAAACTATGCGAAAAAAGGTTCGTTGATTGGATTGATTGGGCGTATTCAAACCAGA
AGCTATGAAAATCAACAAGGAAACCGAGTTTTTGTGACGGAAGTAGTCGTAGAACGCTTCAATCTACTTGAGAGCCGTTC
TAACAACGATACAAGCGTTTCGAACAATCAGACGACAAATTATAAAGGGAACAACCAAAACAGCTCTAACGACTTATCAC
ACGCTCAAAACAATCAATCAAAAAACGTTAATTCCAATCCGTTTGATGGTTCGTCAATGAATACTGATTTAGAACTTCCG
TTTTGA
ATGATTAATACAGTGACTTTAGTAGGAAGATTGACAAAAGACCCAGAGCTTAGAACCACAACAAGTGGAACAGGAGTAGC
GACTTTCACATTAGCAGTAAATCGTGACTTCAAAGATGCGAATGGAAATAGAGAAGCAGACTTTATCAATTGTGTAGCGT
GGAGAAAAACAGCTGAAATTTTAGCAAACTATGCGAAAAAAGGTTCGTTGATTGGATTGATTGGGCGTATTCAAACCAGA
AGCTATGAAAATCAACAAGGAAACCGAGTTTTTGTGACGGAAGTAGTCGTAGAACGCTTCAATCTACTTGAGAGCCGTTC
TAACAACGATACAAGCGTTTCGAACAATCAGACGACAAATTATAAAGGGAACAACCAAAACAGCTCTAACGACTTATCAC
ACGCTCAAAACAATCAATCAAAAAACGTTAATTCCAATCCGTTTGATGGTTCGTCAATGAATACTGATTTAGAACTTCCG
TTTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.581 |
100 |
0.54 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.176 |
100 |
0.54 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
65.839 |
0.385 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
54.206 |
66.46 |
0.36 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
54.206 |
66.46 |
0.36 |