Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   EL309_RS02300 Genome accession   NZ_LR134533
Coordinates   472502..474670 (+) Length   722 a.a.
NCBI ID   WP_036494673.1    Uniprot ID   -
Organism   Neisseria weaveri strain NCTC12742     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 467502..479670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL309_RS02280 (NCTC12742_00441) pilM 469616..470698 (+) 1083 WP_004285028.1 type IV pilus assembly protein PilM -
  EL309_RS02285 (NCTC12742_00442) - 470700..471281 (+) 582 WP_004285027.1 PilN domain-containing protein -
  EL309_RS02290 (NCTC12742_00443) - 471284..471919 (+) 636 WP_004285026.1 type 4a pilus biogenesis protein PilO -
  EL309_RS02295 (NCTC12742_00444) pilP 471941..472480 (+) 540 WP_036494688.1 pilus assembly protein PilP Machinery gene
  EL309_RS02300 (NCTC12742_00445) pilQ 472502..474670 (+) 2169 WP_036494673.1 type IV pilus secretin PilQ Machinery gene
  EL309_RS02305 (NCTC12742_00446) - 474733..475266 (+) 534 WP_004285023.1 shikimate kinase -
  EL309_RS02310 (NCTC12742_00447) aroB 475271..476353 (+) 1083 WP_004285022.1 3-dehydroquinate synthase -
  EL309_RS02315 (NCTC12742_00448) - 476461..477219 (-) 759 WP_172795974.1 TatD family hydrolase -
  EL309_RS02320 (NCTC12742_00449) - 477297..478208 (-) 912 WP_004285020.1 Dyp-type peroxidase -
  EL309_RS02325 (NCTC12742_00450) - 478692..479483 (+) 792 WP_004285019.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 722 a.a.        Molecular weight: 79450.82 Da        Isoelectric Point: 9.8889

>NTDB_id=1124108 EL309_RS02300 WP_036494673.1 472502..474670(+) (pilQ) [Neisseria weaveri strain NCTC12742]
MKPGNFQALSAIGLMFTAMHSAMAGNITDINVSSLPNNQKIIKITFDKDPINPSGFVTSTPARIALDFAGTDIKLANPVL
EYADPLLNQITSAQNNNRARLLLGLNKAGQYNTEIKGNEVWVYIKEAPSSTQSKAAPIQTNAYINEQNHKARKPSEQIIA
TANIDFRKGAQNSGIVEFNAPAFSGQPDIKQQQDRLIVTLKNYPITAQSQRSIDVRDFNTPVHNVTMKRLGNNTQLVIKN
QGSWAFKTQNANGRFQFEITQKSNLSTQGVPGNVNKAFNGRKISLDFQNVEVRTILQILAKESGTNIVASDSVNGKMTLT
LKDVPWDQALDLVMQARNLDMRKQGNIINIAPREELLAKDKSTLQAQKEIEELGPLFSQTFQLKYKNVEEFRKILRLDEK
SSSQNNNSNTLLSSRGSALIDPSTNTLILTDNSNVIRKFQKLIDELDVPTRQVMVEARIVEAKDGFSRSLGAKFGYTANT
SRNSWGSNWSNAVNNQGTHVTNQYNRARDQINGTLTNPEPFSMNPNVNLPAAAATSSIALVRSIASGALGLELSAMQEQN
RGKIISNPRVLTQDRKEATIESGTEIPYQQSTSSGATSVSFKKAVLGLTVTPNITPDGQVIMNIKINKDNPNECGIVDGQ
QTLCVSTKRLETQAMVEDGGTLIVGGIYEEENTNTVNQVPLLGDIPVLGNLFKTRSRNEARKELLIFITPRIMDNQGSNL
RY

Nucleotide


Download         Length: 2169 bp        

>NTDB_id=1124108 EL309_RS02300 WP_036494673.1 472502..474670(+) (pilQ) [Neisseria weaveri strain NCTC12742]
ATGAAACCAGGAAATTTTCAAGCTCTTTCAGCAATAGGTTTAATGTTTACTGCCATGCATTCCGCTATGGCTGGCAATAT
TACAGATATTAACGTATCCAGTTTGCCTAATAACCAAAAAATTATCAAAATTACTTTTGATAAAGATCCTATTAATCCAA
GCGGTTTTGTTACTTCAACACCTGCCCGTATTGCTTTAGATTTTGCCGGTACGGATATCAAGCTAGCGAACCCTGTATTG
GAGTATGCAGATCCCTTGCTAAATCAAATCACAAGTGCCCAAAATAATAATCGTGCACGGCTTCTGTTAGGCTTAAATAA
AGCCGGGCAATACAATACCGAAATCAAAGGTAATGAAGTTTGGGTTTATATTAAAGAAGCCCCCAGCTCAACTCAGTCTA
AAGCCGCACCAATTCAAACCAATGCATATATAAATGAGCAAAATCATAAGGCCCGTAAGCCATCTGAGCAAATTATCGCG
ACAGCTAATATAGATTTCAGAAAAGGCGCACAAAATTCCGGTATTGTCGAATTTAACGCACCTGCATTCTCCGGACAGCC
GGATATTAAACAACAGCAAGACCGATTAATCGTTACTTTAAAGAATTATCCGATTACGGCCCAATCTCAAAGAAGTATCG
ATGTTCGTGACTTCAATACGCCTGTACATAATGTAACCATGAAACGACTGGGTAATAACACTCAGCTTGTCATCAAAAAC
CAAGGAAGCTGGGCTTTCAAAACGCAAAATGCCAATGGCCGCTTCCAATTTGAGATTACTCAGAAGAGTAATCTCTCTAC
CCAAGGCGTACCCGGAAATGTCAATAAAGCATTTAACGGTAGAAAAATTTCTTTAGACTTCCAAAATGTTGAAGTTAGAA
CAATTTTGCAGATTTTGGCAAAAGAATCCGGTACCAATATCGTAGCGAGCGATAGCGTTAACGGAAAAATGACTTTAACT
TTAAAAGATGTGCCTTGGGATCAGGCCTTAGATTTGGTTATGCAGGCCCGCAATTTAGATATGCGCAAACAAGGCAATAT
CATTAATATTGCTCCTAGAGAAGAGCTGTTGGCAAAAGATAAGTCGACACTGCAAGCTCAAAAAGAAATTGAAGAGCTGG
GTCCACTATTTTCTCAAACATTCCAATTAAAATATAAAAACGTAGAAGAATTCAGAAAAATTTTACGTTTGGATGAGAAA
AGCAGCAGTCAAAATAATAATTCCAATACATTATTGAGCAGCCGTGGCAGTGCTTTAATTGATCCAAGCACGAACACTTT
GATCTTAACGGACAACAGCAATGTTATCCGGAAATTCCAAAAACTGATTGACGAACTGGATGTACCTACCCGTCAAGTGA
TGGTAGAGGCTCGTATTGTTGAAGCTAAAGACGGTTTCTCACGCAGTTTGGGGGCTAAATTTGGTTACACTGCCAATACT
TCCCGTAACAGCTGGGGATCCAATTGGAGTAATGCCGTTAATAATCAAGGAACACACGTTACCAACCAATATAACCGCGC
TAGGGATCAAATTAACGGCACATTGACGAATCCCGAACCTTTCTCCATGAATCCTAATGTGAATCTACCGGCAGCAGCGG
CAACCAGCAGTATCGCTTTGGTACGTTCTATCGCTTCAGGCGCTTTGGGATTGGAATTATCCGCAATGCAAGAACAAAAC
CGCGGGAAAATTATTTCTAATCCAAGAGTGTTAACTCAGGATAGAAAAGAAGCAACCATCGAATCCGGTACCGAAATTCC
TTATCAGCAATCCACGTCGAGTGGTGCCACTTCGGTATCGTTCAAAAAAGCCGTATTGGGTTTAACCGTTACACCCAACA
TCACTCCGGACGGTCAGGTTATTATGAATATCAAAATCAACAAAGATAACCCCAATGAGTGTGGCATTGTCGATGGCCAA
CAAACCTTGTGTGTCAGCACCAAGCGCCTGGAAACCCAAGCCATGGTTGAGGATGGCGGTACATTAATCGTCGGAGGTAT
TTATGAAGAAGAAAATACCAACACTGTCAACCAAGTTCCTTTATTGGGCGATATCCCGGTTTTAGGCAATCTGTTTAAAA
CCAGATCGCGCAATGAAGCTCGCAAGGAATTGCTGATTTTCATCACACCCCGCATCATGGATAATCAAGGCAGCAATCTT
CGTTATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(38-115)

Bacterial type II/III secretion system short domain (Secretin_N)

(379-452)

Bacterial type II and III secretion system protein (Secretin)

(555-714)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria gonorrhoeae strain FA1090

57.796

100

0.596
  pilQ Neisseria meningitidis MC58

61.014

79.224

0.483
  pilQ Neisseria meningitidis M1080

60.839

79.224

0.482

Multiple sequence alignment