Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   EL305_RS03295 Genome accession   NZ_LR134528
Coordinates   558957..559430 (+) Length   157 a.a.
NCBI ID   WP_002236892.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC12163     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 553957..564430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL305_RS03270 (NCTC12163_00559) dnaB 554420..555826 (+) 1407 WP_002236887.1 replicative DNA helicase -
  EL305_RS03275 (NCTC12163_00560) pilH 556128..556793 (+) 666 WP_002236888.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EL305_RS03280 (NCTC12163_00561) pilI 556825..557436 (+) 612 WP_002236889.1 type IV pilus modification protein PilV Machinery gene
  EL305_RS03285 (NCTC12163_00562) pilJ 557433..558374 (+) 942 WP_002236890.1 PilW family protein Machinery gene
  EL305_RS03290 (NCTC12163_00563) pilK 558353..558952 (+) 600 WP_002236891.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  EL305_RS03295 (NCTC12163_00564) pilX 558957..559430 (+) 474 WP_002236892.1 PilX family type IV pilin Machinery gene
  EL305_RS03315 (NCTC12163_00565) - 561512..561940 (-) 429 Protein_558 AzlC family ABC transporter permease -
  EL305_RS03320 (NCTC12163_00566) dut 562088..562540 (+) 453 WP_002236894.1 dUTP diphosphatase -
  EL305_RS03325 (NCTC12163_00567) dapC 562616..563803 (+) 1188 WP_002222650.1 succinyldiaminopimelate transaminase -
  EL305_RS14495 - 563891..564016 (+) 126 Protein_561 IS5/IS1182 family transposase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17528.30 Da        Isoelectric Point: 9.4344

>NTDB_id=1124023 EL305_RS03295 WP_002236892.1 558957..559430(+) (pilX) [Neisseria meningitidis strain NCTC12163]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNTVKQFILKNPLDDNQTIKSKLEIFVSGYKM
NPKIAEKYNVSVHFVNKEKPRAYSLVGVPKTGTGYTLSVWMNSVGDGYKCRDAASARAHLETLSSDVGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1124023 EL305_RS03295 WP_002236892.1 558957..559430(+) (pilX) [Neisseria meningitidis strain NCTC12163]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATACTGTCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCGAAAAATATAATGTTTCGGTGCATTTTGTCAATAAGGAAAAACCAAGGGCATACAGCTTGGTCGG
TGTTCCAAAGACGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCGAGCTCATTTGGAGACCTTGTCCTCAGATGTCGGCTGTGAAGCCTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterproScan.

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

98.089

100

0.981
  pilL Neisseria gonorrhoeae MS11

86.624

100

0.866

Multiple sequence alignment