Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   EL305_RS03285 Genome accession   NZ_LR134528
Coordinates   557433..558374 (+) Length   313 a.a.
NCBI ID   WP_002236890.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC12163     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 552433..563374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL305_RS03260 (NCTC12163_00558) - 553669..554256 (-) 588 WP_002236886.1 superoxide dismutase -
  EL305_RS03270 (NCTC12163_00559) dnaB 554420..555826 (+) 1407 WP_002236887.1 replicative DNA helicase -
  EL305_RS03275 (NCTC12163_00560) pilH 556128..556793 (+) 666 WP_002236888.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EL305_RS03280 (NCTC12163_00561) pilI 556825..557436 (+) 612 WP_002236889.1 type IV pilus modification protein PilV Machinery gene
  EL305_RS03285 (NCTC12163_00562) pilJ 557433..558374 (+) 942 WP_002236890.1 PilW family protein Machinery gene
  EL305_RS03290 (NCTC12163_00563) pilK 558353..558952 (+) 600 WP_002236891.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  EL305_RS03295 (NCTC12163_00564) pilX 558957..559430 (+) 474 WP_002236892.1 PilX family type IV pilin Machinery gene
  EL305_RS03315 (NCTC12163_00565) - 561512..561940 (-) 429 Protein_558 AzlC family ABC transporter permease -
  EL305_RS03320 (NCTC12163_00566) dut 562088..562540 (+) 453 WP_002236894.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 34275.97 Da        Isoelectric Point: 9.2045

>NTDB_id=1124021 EL305_RS03285 WP_002236890.1 557433..558374(+) (pilJ) [Neisseria meningitidis strain NCTC12163]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGLLSMIVLMAVGSSYFTSRKLNDAANERLAAQQDLRNAATLIVRDARMAGGFG
CFNMSEHPATDVVSDVAQKNRLFSLKRNSTNKLIPIAESSNIGYQGFAQARPALIFQYGIDDVNASAETTVVSSCGAISK
PGKQIPTLEDAKKELKIQNPDKEQNGNIARQRHVVNAYAVGRIAGEEGLFRFQLDDKGKWGNPQLLAKKIKRMDVRYIYV
SSCPEDEDAGKEEQFKYTDKFDSTQNAVTPAGVEVLLDSGLDAKIAASSDNSIYAYRINATIRGGNVCANRTL

Nucleotide


Download         Length: 942 bp        

>NTDB_id=1124021 EL305_RS03285 WP_002236890.1 557433..558374(+) (pilJ) [Neisseria meningitidis strain NCTC12163]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAAGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCCTGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGCACAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCAGGGGGCTTCGGT
TGTTTCAATATGTCCGAGCATCCTGCAACTGATGTTGTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAG
GAACAGTACAAATAAACTTATCCCCATAGCGGAATCTTCAAATATCGGATATCAGGGTTTTGCCCAGGCTCGTCCGGCAT
TGATTTTCCAATACGGAATCGATGATGTTAATGCAAGCGCCGAGACTACCGTCGTCAGCAGCTGTGGCGCAATATCGAAA
CCGGGTAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTCAGAATCCTGATAAGGAGCAAAATGGCAA
TATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAAT
TGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAAACGTATGGATGTGCGGTATATCTATGTT
TCCAGTTGTCCTGAAGATGAAGATGCCGGGAAAGAGGAACAATTCAAATATACGGATAAATTCGACAGCACCCAAAATGC
TGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGCCTTGATGCCAAGATTGCCGCTTCTTCAGACAATAGTATTT
ATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

87.342

100

0.882

Multiple sequence alignment