Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   EL305_RS03290 Genome accession   NZ_LR134528
Coordinates   558353..558952 (+) Length   199 a.a.
NCBI ID   WP_002236891.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NCTC12163     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 553353..563952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL305_RS03260 (NCTC12163_00558) - 553669..554256 (-) 588 WP_002236886.1 superoxide dismutase -
  EL305_RS03270 (NCTC12163_00559) dnaB 554420..555826 (+) 1407 WP_002236887.1 replicative DNA helicase -
  EL305_RS03275 (NCTC12163_00560) pilH 556128..556793 (+) 666 WP_002236888.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  EL305_RS03280 (NCTC12163_00561) pilI 556825..557436 (+) 612 WP_002236889.1 type IV pilus modification protein PilV Machinery gene
  EL305_RS03285 (NCTC12163_00562) pilJ 557433..558374 (+) 942 WP_002236890.1 PilW family protein Machinery gene
  EL305_RS03290 (NCTC12163_00563) pilK 558353..558952 (+) 600 WP_002236891.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  EL305_RS03295 (NCTC12163_00564) pilX 558957..559430 (+) 474 WP_002236892.1 PilX family type IV pilin Machinery gene
  EL305_RS03315 (NCTC12163_00565) - 561512..561940 (-) 429 Protein_558 AzlC family ABC transporter permease -
  EL305_RS03320 (NCTC12163_00566) dut 562088..562540 (+) 453 WP_002236894.1 dUTP diphosphatase -
  EL305_RS03325 (NCTC12163_00567) dapC 562616..563803 (+) 1188 WP_002222650.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21915.74 Da        Isoelectric Point: 5.3843

>NTDB_id=1124022 EL305_RS03290 WP_002236891.1 558353..558952(+) (pilK) [Neisseria meningitidis strain NCTC12163]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYDT
DSKVTFSENCEKGLCTAVNVRTNTNNGNEEAFDNIVVQGKPTVEAVKRSCPANSTNLCIDNKGMEYKKGTQSVSKPPRYI
IEYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 600 bp        

>NTDB_id=1124022 EL305_RS03290 WP_002236891.1 558353..558952(+) (pilK) [Neisseria meningitidis strain NCTC12163]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTACTGATGGT
GATGATCGTCGTGGCATTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGTGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATACAAATAATGG
TAATGAAGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAATT
CTACCAACCTGTGCATTGACAATAAAGGGATGGAATATAAGAAAGGCACGCAAAGTGTCAGCAAACCACCGCGCTATATT
ATCGAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGT
GGTCGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-194)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

88.67

100

0.905

Multiple sequence alignment