Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | EL264_RS00970 | Genome accession | NZ_LR134519 |
| Coordinates | 197194..198324 (+) | Length | 376 a.a. |
| NCBI ID | WP_126473965.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain NCTC12823 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 192194..203324
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL264_RS00935 (NCTC12823_00189) | panD | 192633..192986 (+) | 354 | WP_024368743.1 | aspartate 1-decarboxylase | - |
| EL264_RS00940 (NCTC12823_00190) | - | 192989..193291 (+) | 303 | WP_000347928.1 | YbaB/EbfC family nucleoid-associated protein | - |
| EL264_RS00945 (NCTC12823_00191) | - | 193291..194286 (+) | 996 | WP_126474832.1 | PDZ domain-containing protein | - |
| EL264_RS00950 (NCTC12823_00192) | comB6 | 194294..195349 (+) | 1056 | WP_126474831.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| EL264_RS00955 (NCTC12823_00193) | comB7 | 195365..195478 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| EL264_RS00960 (NCTC12823_00194) | comB8 | 195475..196218 (+) | 744 | WP_126473961.1 | type IV secretion system protein | Machinery gene |
| EL264_RS00965 (NCTC12823_00195) | comB9 | 196218..197201 (+) | 984 | WP_126473963.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| EL264_RS00970 (NCTC12823_00196) | comB10 | 197194..198324 (+) | 1131 | WP_126473965.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| EL264_RS00975 (NCTC12823_00197) | - | 198394..199806 (+) | 1413 | WP_126473967.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| EL264_RS00980 (NCTC12823_00198) | gmd | 199836..200981 (+) | 1146 | WP_096468567.1 | GDP-mannose 4,6-dehydratase | - |
| EL264_RS00985 (NCTC12823_00199) | - | 200974..201906 (+) | 933 | WP_126473969.1 | GDP-L-fucose synthase family protein | - |
| EL264_RS00990 (NCTC12823_00200) | hypE | 202209..203207 (-) | 999 | WP_126473971.1 | hydrogenase expression/formation protein HypE | - |
Sequence
Protein
Download Length: 376 a.a. Molecular weight: 41981.53 Da Isoelectric Point: 9.8333
>NTDB_id=1123781 EL264_RS00970 WP_126473965.1 197194..198324(+) (comB10) [Helicobacter pylori strain NCTC12823]
MNKWLKGAIVFALGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDVTIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPIDPNTTPPKKDFSPKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWLKGAIVFALGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDVTIKALQEQLKA
ALKALNSKEMNYSKEETFKSPPIDPNTTPPKKDFSPKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGATNFFGDYLLMQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1131 bp
>NTDB_id=1123781 EL264_RS00970 WP_126473965.1 197194..198324(+) (comB10) [Helicobacter pylori strain NCTC12823]
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGCACTTGGTTTTGCAACGATTATAACAATTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCAAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACCAACACGGAAAGCTCCAAAGACGTTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAAACTTTTAAAAGCCCTCCCATAGATCCAAACAC
AACCCCCCCTAAAAAAGATTTTTCTCCAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTCTCATCACGCCTATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCTGTCTTAATCCCCA
AAGGCTCTAAGGTCATAGGCTATTACAGCAACAACAATAAAATGGGCGAATACCGCTTGGATATTGTATGGAGTCGCATC
ATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGTGGGGGA
ATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCCTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTACCTTTTAATGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGTGATTAG
AGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATTTTTTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA
ATGAATAAGTGGCTTAAGGGGGCGATTGTTTTTGCACTTGGTTTTGCAACGATTATAACAATTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCAAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACCAACACGGAAAGCTCCAAAGACGTTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAAACTTTTAAAAGCCCTCCCATAGATCCAAACAC
AACCCCCCCTAAAAAAGATTTTTCTCCAAAGCAATTAGATTTATTAGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTCTCATCACGCCTATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCTGTCTTAATCCCCA
AAGGCTCTAAGGTCATAGGCTATTACAGCAACAACAATAAAATGGGCGAATACCGCTTGGATATTGTATGGAGTCGCATC
ATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTGGTGGGGGA
ATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCCTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTACCTTTTAATGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGTGATTAG
AGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATTTTTTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
97.606 |
100 |
0.976 |