Detailed information NTG1123780

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: EL264_RS00965
• Genome accession: NZ_LR134519
• Coordinates: 196218..197201 (+)
• Length: 327 a.a.
• NCBI ID: WP_126473963.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain NCTC12823
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 191218..202201

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL264_RS00935 (NCTC12823_00189)	panD	192633..192986 (+)	354	WP_024368743.1	aspartate 1-decarboxylase	-
EL264_RS00940 (NCTC12823_00190)	-	192989..193291 (+)	303	WP_000347928.1	YbaB/EbfC family nucleoid-associated protein	-
EL264_RS00945 (NCTC12823_00191)	-	193291..194286 (+)	996	WP_126474832.1	PDZ domain-containing protein	-
EL264_RS00950 (NCTC12823_00192)	comB6	194294..195349 (+)	1056	WP_126474831.1	P-type conjugative transfer protein TrbL	Machinery gene
EL264_RS00955 (NCTC12823_00193)	comB7	195365..195478 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
EL264_RS00960 (NCTC12823_00194)	comB8	195475..196218 (+)	744	WP_126473961.1	type IV secretion system protein	Machinery gene
EL264_RS00965 (NCTC12823_00195)	comB9	196218..197201 (+)	984	WP_126473963.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
EL264_RS00970 (NCTC12823_00196)	comB10	197194..198324 (+)	1131	WP_126473965.1	DNA type IV secretion system protein ComB10	Machinery gene
EL264_RS00975 (NCTC12823_00197)	-	198394..199806 (+)	1413	WP_126473967.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
EL264_RS00980 (NCTC12823_00198)	gmd	199836..200981 (+)	1146	WP_096468567.1	GDP-mannose 4,6-dehydratase	-
EL264_RS00985 (NCTC12823_00199)	-	200974..201906 (+)	933	WP_126473969.1	GDP-L-fucose synthase family protein	-

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37661.37 Da
• Isoelectric Point: 9.4492

>NTDB_id=1123780 EL264_RS00965 WP_126473963.1 196218..197201(+) (comB9) [Helicobacter pylori strain NCTC12823]
MRKFLYALMGFLLAFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYSQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLENAPTNNKPLKEEPLKEEKEETKEKEEETITIGDNTNAMKIVKKDIQKGYKALKSSQRKWYCLG
ICSKKSKLSLMPKEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRF
VKKAKDE

Nucleotide

• Length: 984 bp

>NTDB_id=1123780 EL264_RS00965 WP_126473963.1 196218..197201(+) (comB9) [Helicobacter pylori strain NCTC12823]
ATGCGGAAATTTTTATACGCTCTCATGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCCAAAATGTCCAACACTTTGAATATTGACTATTCTCAAGGGCAAACCTATAAAATCCGCTTGCGCTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGACGCGAAAATCTTAGAAAG
TAACGATCGCATTTTACTCATCAAGCCTTTACAAATCGGCGTGGATTCCAATATCAGCGTGATTGATAGCGAGGGTAAGA
TCTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTGCAGGTTTTCATAGAGGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAATAAAGAAAATACCCTTGAAAATGCCCCCACAAACAACAAGCCCTTAAA
AGAAGAACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAACTATTGGCGATAACACCAATG
CGATGAAAATCGTTAAAAAAGACATTCAAAAAGGCTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGG
ATTTGTTCTAAAAAATCCAAGCTCTCTTTGATGCCTAAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGA
CAAAAGATTAGCGCTCTCTAAATTCCCCGTGATTTATAAGGTCGTTGATGGCTATGATAACCCGGTGAATACAAGGATTG
TAGGCGATTACATTATCGCTGAAGACGTTTCTGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATCCGTTTT
GTCAAAAAGGCTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-318)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	95.166	100	0.963