Detailed information
Bioinformatically predicted
Overview
| Name | comB6 | Type | Machinery gene |
| Locus tag | EL264_RS00950 | Genome accession | NZ_LR134519 |
| Coordinates | 194294..195349 (+) | Length | 351 a.a. |
| NCBI ID | WP_126474831.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain NCTC12823 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 189294..200349
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL264_RS00920 (NCTC12823_00186) | - | 189728..190141 (+) | 414 | WP_001022998.1 | universal stress protein | - |
| EL264_RS00925 (NCTC12823_00187) | - | 190143..190418 (+) | 276 | WP_000784903.1 | ATP-dependent Clp protease adaptor ClpS | - |
| EL264_RS00930 (NCTC12823_00188) | - | 190418..192643 (+) | 2226 | WP_126473959.1 | AAA family ATPase | - |
| EL264_RS00935 (NCTC12823_00189) | panD | 192633..192986 (+) | 354 | WP_024368743.1 | aspartate 1-decarboxylase | - |
| EL264_RS00940 (NCTC12823_00190) | - | 192989..193291 (+) | 303 | WP_000347928.1 | YbaB/EbfC family nucleoid-associated protein | - |
| EL264_RS00945 (NCTC12823_00191) | - | 193291..194286 (+) | 996 | WP_126474832.1 | PDZ domain-containing protein | - |
| EL264_RS00950 (NCTC12823_00192) | comB6 | 194294..195349 (+) | 1056 | WP_126474831.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| EL264_RS00955 (NCTC12823_00193) | comB7 | 195365..195478 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| EL264_RS00960 (NCTC12823_00194) | comB8 | 195475..196218 (+) | 744 | WP_126473961.1 | type IV secretion system protein | Machinery gene |
| EL264_RS00965 (NCTC12823_00195) | comB9 | 196218..197201 (+) | 984 | WP_126473963.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| EL264_RS00970 (NCTC12823_00196) | comB10 | 197194..198324 (+) | 1131 | WP_126473965.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| EL264_RS00975 (NCTC12823_00197) | - | 198394..199806 (+) | 1413 | WP_126473967.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 39774.69 Da Isoelectric Point: 9.2441
>NTDB_id=1123777 EL264_RS00950 WP_126474831.1 194294..195349(+) (comB6) [Helicobacter pylori strain NCTC12823]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSTNALTEALLFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FATIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVMCLKKCFALGFYKPFLLLVGFLNVSVTKALINAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSTNLSQNALTSLQYITTSPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSTNALTEALLFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FATIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVMCLKKCFALGFYKPFLLLVGFLNVSVTKALINAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSTNLSQNALTSLQYITTSPAPSSVSTSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI
Nucleotide
Download Length: 1056 bp
>NTDB_id=1123777 EL264_RS00950 WP_126474831.1 194294..195349(+) (comB6) [Helicobacter pylori strain NCTC12823]
ATGAAAAATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACTTTGCATGCACAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCACTAACGCGCTAACAGAAGCGTTATTATTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTAAAAAATCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TCATCAGCGATTTGAGCCATAATGAAATGTCCGTGTGGCTTTTTTTAAGCATCTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCAACTATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAAGCTTTAATCAACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTA
GTGGTAGCGTTATTTTTGTGCTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTCAAAGAAACTTACAAACTCGCCACCAATTTGAGCACCAACCTCAGCCAAAACGCTCTTACTTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
ATGAAAAATGACGCTTATGAAATCATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACTTTGCATGCACAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCACTAACGCGCTAACAGAAGCGTTATTATTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTAAAAAATCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCGCCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TCATCAGCGATTTGAGCCATAATGAAATGTCCGTGTGGCTTTTTTTAAGCATCTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCAACTATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAAGCTTTAATCAACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTA
GTGGTAGCGTTATTTTTGTGCTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTCAAAGAAACTTACAAACTCGCCACCAATTTGAGCACCAACCTCAGCCAAAACGCTCTTACTTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTACTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB6 | Helicobacter pylori 26695 |
94.587 |
100 |
0.946 |