Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EL252_RS05805 Genome accession   NZ_LR134514
Coordinates   1260865..1262076 (-) Length   403 a.a.
NCBI ID   WP_126417627.1    Uniprot ID   -
Organism   Pasteurella multocida subsp. septica strain NCTC11619     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1255865..1267076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL252_RS05775 (NCTC11619_01159) raiA 1256641..1256958 (-) 318 WP_005722573.1 ribosome-associated translation inhibitor RaiA -
  EL252_RS05780 (NCTC11619_01160) - 1257203..1258576 (-) 1374 WP_096743226.1 alanine/glycine:cation symporter family protein -
  EL252_RS05785 (NCTC11619_01162) - 1259025..1259294 (-) 270 WP_005722568.1 GNAT family N-acetyltransferase -
  EL252_RS05790 (NCTC11619_01163) yacG 1259294..1259497 (-) 204 WP_083004817.1 DNA gyrase inhibitor YacG -
  EL252_RS05795 (NCTC11619_01164) coaE 1259508..1260128 (-) 621 WP_096743227.1 dephospho-CoA kinase -
  EL252_RS05800 (NCTC11619_01165) - 1260140..1260865 (-) 726 WP_096743228.1 prepilin peptidase -
  EL252_RS05805 (NCTC11619_01166) pilC 1260865..1262076 (-) 1212 WP_126417627.1 type II secretion system F family protein Machinery gene
  EL252_RS05810 (NCTC11619_01167) pilB 1262076..1263464 (-) 1389 WP_115097850.1 GspE/PulE family protein Machinery gene
  EL252_RS05815 (NCTC11619_01168) pilA 1263464..1263898 (-) 435 WP_126417628.1 prepilin peptidase-dependent pilin Machinery gene
  EL252_RS05820 (NCTC11619_01169) ampD 1264058..1264624 (+) 567 WP_104227618.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  EL252_RS05825 (NCTC11619_01170) rppH 1265210..1265806 (+) 597 WP_083004799.1 RNA pyrophosphohydrolase -
  EL252_RS05830 (NCTC11619_01171) - 1265809..1266603 (+) 795 WP_083004796.1 sulfite exporter TauE/SafE family protein -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 46147.12 Da        Isoelectric Point: 9.7864

>NTDB_id=1123663 EL252_RS05805 WP_126417627.1 1260865..1262076(-) (pilC) [Pasteurella multocida subsp. septica strain NCTC11619]
MKKLKMFRWKGINRLQQIQKGVIVAESKEIAQQSLLLQGVQQLHLQRNWQFSMQPKYTEICDLLMQLAMLLQASVPLKES
LQLLQRHASHIELTQWLRQLLCSLESGFSFSTALATQDRYLTKQEYQLISVGESTGKLPLVCTQLAKQRQQSLALRRKVQ
KMLFYPMLVLAVTLILTLLLLLFIVPQFAEIYANQPLPAFTVLLLNISTGLRGYAFQLSLLLIFGFIFLMLNVRQRVGLY
RLKNCLLHFIPIFKQIAQHHELIHFCRHLHLMLSSGMPLQQALQTFLPTQKSGIAKHALTEMRLAEEVQLMLKGIAQGYT
FSEVIGSNLFPEMAQQMLHVGEQTGRLSEMLQYIAESYQQKLEHQLDLLSQLLEPCLMLVIGSIIGVILLGMYLPMFNMG
ALV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=1123663 EL252_RS05805 WP_126417627.1 1260865..1262076(-) (pilC) [Pasteurella multocida subsp. septica strain NCTC11619]
ATGAAAAAATTAAAAATGTTTCGTTGGAAAGGAATAAATCGATTACAACAAATACAAAAAGGCGTTATTGTGGCGGAAAG
TAAAGAGATAGCACAGCAATCTTTATTACTTCAGGGCGTTCAGCAACTGCATTTACAACGAAATTGGCAGTTTTCTATGC
AACCTAAATATACAGAGATTTGTGATCTGTTAATGCAATTAGCGATGCTATTACAAGCTTCGGTTCCCTTGAAGGAAAGT
TTACAGCTATTACAGCGACATGCTAGCCATATTGAGTTAACGCAATGGTTACGTCAGTTACTCTGTTCACTCGAAAGTGG
ATTTTCTTTTTCAACCGCGCTAGCTACACAAGATCGTTACTTAACAAAACAGGAATACCAATTAATTTCTGTTGGTGAAT
CGACAGGGAAACTACCACTTGTTTGTACACAATTAGCGAAACAACGTCAACAATCACTGGCGTTACGGCGCAAAGTTCAG
AAAATGTTGTTTTATCCAATGTTAGTGCTTGCTGTGACATTGATCTTAACATTGTTGTTACTGCTATTTATTGTGCCACA
GTTTGCTGAGATTTATGCAAATCAACCTTTACCTGCGTTTACTGTGTTGTTATTGAATATATCGACAGGGTTACGTGGTT
ATGCTTTTCAATTGAGTCTCCTATTAATTTTCGGCTTCATTTTTTTGATGTTAAATGTGAGACAGCGAGTTGGACTATAT
CGATTAAAAAATTGTCTGCTTCATTTCATTCCCATCTTTAAGCAAATTGCGCAACATCACGAGCTTATTCATTTTTGTCG
TCATTTACATCTTATGCTCAGCTCGGGCATGCCTTTACAACAGGCATTGCAGACTTTTTTACCTACACAGAAAAGTGGTA
TAGCAAAACACGCGCTTACCGAGATGCGACTTGCTGAAGAAGTCCAATTAATGTTAAAGGGAATTGCTCAAGGTTATACG
TTTTCTGAAGTTATCGGCTCCAACTTATTTCCGGAGATGGCACAACAGATGTTACATGTTGGTGAACAGACAGGGCGATT
AAGCGAAATGTTGCAGTATATAGCAGAAAGTTATCAACAAAAGTTAGAGCACCAACTTGATTTACTTTCACAATTATTGG
AACCCTGTTTAATGTTAGTGATTGGTTCGATTATTGGCGTCATTTTATTGGGCATGTATCTACCTATGTTTAATATGGGG
GCATTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(265-395)

Type II secretion system (T2SS), protein F (T2SSF)

(64-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

48.642

100

0.489
  pilC Haemophilus influenzae 86-028NP

48.395

100

0.486
  pilC Glaesserella parasuis strain SC1401

39.012

100

0.392

Multiple sequence alignment